Mercurial > repos > siwaa > redelac_stics_s

diff redelacSticsSimulator.bash @ 6:41f652e6616f draft

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"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/f8a7aebffe0c850bef03045efa3772aca6cd51c2/tools/REDELACSticsSimulator commit f8a7aebffe0c850bef03045efa3772aca6cd51c2-dirty"
author siwaa
date Tue, 26 Sep 2023 15:21:42 +0000
parents
children 2586f7dbcde1
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/redelacSticsSimulator.bash	Tue Sep 26 15:21:42 2023 +0000
@@ -0,0 +1,12 @@
+cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0 . &&
+unzip -qq $4 -d TMP &&
+export WSname=$(ls TMP) &&
+mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/successionPlan.csv &&
+cd JavaSTICS-1.5.1-STICS-10.0.0 &&
+Rscript --verbose $3/redelacSticsSimulator.R $1 $2 &&
+mv WS $WSname &&
+zip -qq -r $WSname $WSname &&
+cp $WSname.zip $6 &&
+cp results.RData $7
+