Mercurial > repos > siwaa > redelac_stics_s
diff redelacSticsSimulator.R @ 2:ea8e91473dc8 draft
"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/4c3e6dc71284e3eecf1cfa8402aaf12dc49c1ee4/tools/REDELACSticsSimulator commit 4c3e6dc71284e3eecf1cfa8402aaf12dc49c1ee4-dirty"
author | siwaa |
---|---|
date | Fri, 23 Jun 2023 10:17:27 +0000 |
parents | |
children | f262814e48a3 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/redelacSticsSimulator.R Fri Jun 23 10:17:27 2023 +0000 @@ -0,0 +1,81 @@ +library(SticsRFiles) +library(SticsOnR) +library(parallel) +library(doParallel) +library(readxl) + +workspace <- paste0(getwd(), "/WS") +javastics_path <- getwd() +default_config_path <- paste0(javastics_path, "/config") + +# copy of the var.mod and rap.mod into the config folder +# generalizing maybe should be inside a config folder + +#file.copy(from = file.path(workspace, "var.mod"), +# to = file.path(default_config_path, "var.mod"), +# overwrite = TRUE) +#file.copy(from = file.path(workspace, "rap.mod"), +# to = file.path(default_config_path, "rap.mod"), +# overwrite = TRUE) + +txt_path <- paste0(getwd(), "/WS/txt_files") +#dir.create(txt_path,recursive = T) + +#gen_usms_xml2txt(javastics = javastics_path, +# workspace = workspace, +# out_dir = txt_path, +# check = FALSE) + +print("==================================") + +print(paste0("Cores=", detectCores())) +print(paste0("javastics=", javastics_path)) +print(paste0("ws=", workspace)) +print(paste0("out_dir=", txt_path)) + +print("==================================") + + +# List of successive USMs +successive_usms_file <- ("successionPlan.csv") +successive_usms_tab <- read.csv(file = file.path(workspace, successive_usms_file), sep =";") + +no_cores <- detectCores() - 1 +#no_cores <- 10 +cl <- makeCluster(no_cores) +registerDoParallel(cl) + +result <- foreach(i=1:nrow(successive_usms_tab), + .packages = c("SticsRFiles", "SticsOnR") ) %dopar% { + + + print(paste("coucou ", i)) + nusms <- as.numeric(successive_usms_tab[i,2]) + print(paste0("coco ", nusms)) + + vec <- as.character(successive_usms_tab[i,c(3:(2+nusms))]) + + list_successive_usms <- list(vec) + + sim_options <- stics_wrapper_options(javastics = javastics_path, + stics_exe = paste0(javastics_path,"/bin/stics_modulo"), + workspace = txt_path, + verbose = TRUE, + successive = list_successive_usms) + list_usms <- vec + + stics_wrapper(model_options = sim_options, situation = list_usms) + } + +stopCluster(cl) + +for (i in 1:nrow(successive_usms_tab)) { #i=1 + if (i == 1) { + simPCP <- result[[i]] + } else { + simPCP$sim_list <- c(simPCP$sim_list, result[[i]]$sim_list) + } + +} + +save(simPCP, file = "results.RData")