--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/redelacSticsSimulator.xml	Fri Jun 23 10:17:27 2023 +0000
@@ -0,0 +1,54 @@
+<tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.1">
+  <description>to run sequences paralelly [Stics-10.0.0]</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics:10.0.0</container>
+  </requirements>
+  <command detect_errors="aggressive">
+    <![CDATA[ 
+	     cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
+	     rm JavaSTICS-1.5.1-STICS-10.0.0/bin/stics_modulo &&
+             cp $__tool_directory__/stics_modulo JavaSTICS-1.5.1-STICS-10.0.0/bin &&
+	     unzip -qq ${WorkSpace} -d TMP &&
+             export WSname=\$(ls TMP) &&
+	     mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+	     cp ${SuccessionPlan} JavaSTICS-1.5.1-STICS-10.0.0/WS/successionPlan.csv &&
+	     cd JavaSTICS-1.5.1-STICS-10.0.0 &&
+	     Rscript --verbose $__tool_directory__/redelacSticsSimulator.R \${GALAXY_SLOTS:-2}	&&
+             mv WS \$WSname &&
+	     zip -qq -r \$WSname \$WSname &&
+	     cp \$WSname.zip ${SimulatedWorkspace} &&
+	     cp results.RData ${SimulationResults}
+     ]]>
+  </command>
+  <inputs>
+    <param name="WorkSpace" type="data" format="zip" label="Select a stics Workspace(zip file)"/>
+    <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/>
+    <param name="Tag" type="text" value="" label="Outputs tag"/>
+  </inputs>
+  <outputs>
+    <data format="zip" name="SimulatedWorkspace"
+          label="SticsSimulatedWorkspace${Tag}">
+    </data>
+    <data format="rdata" name="SimulationResults"
+          label="SticsOnResults${Tag}">
+    </data>
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+*The usage of this tool is restricted to the user of the stics_authorized group.*
+
+*To be granted, apply to the Project Stics Team and then request to SIWAA*
+
+Documentation
+-------------
+A tool to simulate stics rotation paralelly
+
+Credits
+-------
+-  Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
+-  Stics Site: https://www6.paca.inra.fr/stics_eng
+-  Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Copyright: INRAE
+  </help>
+</tool>