view redelacSticsSimulator.R @ 6:41f652e6616f draft

"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/f8a7aebffe0c850bef03045efa3772aca6cd51c2/tools/REDELACSticsSimulator commit f8a7aebffe0c850bef03045efa3772aca6cd51c2-dirty"
author siwaa
date Tue, 26 Sep 2023 15:21:42 +0000
parents 70ae7516e925
children 2586f7dbcde1
line wrap: on
line source

library(SticsRFiles)
library(SticsOnR)
library(parallel)
library(doParallel)
library(readxl)

sessionInfo()

workspace <- paste0(getwd(), "/WS")
javastics_path <- getwd()
default_config_path <- paste0(javastics_path, "/config")

txt_path <- paste0(getwd(), "/WS/txt_files")

# List of successive USMs
successive_usms_file <- ("successionPlan.csv")
successive_usms_tab <- read.csv(file = file.path(workspace, successive_usms_file), sep =";")

args = commandArgs(trailingOnly = TRUE)

parallel <- (args[1] == "parallel")
nbSlots <- as.integer(args[2])

if (parallel) {
  cl <- makeCluster(nbSlots)
  print(cl)
  registerDoParallel(cl)
  `%dordopar%` <- `%dopar%`
} else {
  `%dordopar%` <- `%do%`
}

result <- foreach(i=1:nrow(successive_usms_tab),
                  .packages = c("foreach", "SticsRFiles", "SticsOnR") ) %dordopar% {

  nusms <- as.numeric(successive_usms_tab[i,2])
  
  vec <- as.character(successive_usms_tab[i,c(3:(2+nusms))])
  
  list_successive_usms <- list(vec)
  
  sim_options <- stics_wrapper_options(javastics = javastics_path, 
                                       stics_exe = paste0(javastics_path,"/bin/stics_modulo"),
                                       workspace = txt_path, 
                                       verbose = TRUE, 
                                       successive = list_successive_usms)
  list_usms <- vec

  return(stics_wrapper(model_options = sim_options, situation = list_usms))

}

if (parallel) stopCluster(cl)

for (i in 1:nrow(successive_usms_tab)) { #i=1
  if (i == 1) {
    simPCP <- result[[i]]
  } else {
    simPCP$sim_list <- c(simPCP$sim_list, result[[i]]$sim_list)
  }

}

save(simPCP, file = "results.RData")