Mercurial > repos > siwaa > redelac_stics_t

comparison redelacSticsTool.bash @ 24:0e673be917e3 draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 596ce5faab821d6dcaf17fd56e002adc5be472fc"
author siwaa
date Tue, 01 Sep 2026 07:35:51 +0000
parents af807768332e
children
comparison
equal deleted inserted replaced
23:3b44cb0a1e76 24:0e673be917e3
32 echo "Step 1, time to run the R script:" && 32 echo "Step 1, time to run the R script:" &&
33 echo "=================================" && 33 echo "=================================" &&
34 cat ./bashlog && 34 cat ./bashlog &&
35 echo "=================================" && 35 echo "=================================" &&
36 cd WS && 36 cd WS &&
37 (if [ "${19}" != "ko" ];
38 then
39 (aws s3 cp analyse_simulations_STICS "${20}" --recursive --endpoint-url "${S3_ENDPOINT}")
40 else
41 (
37 #/usr/bin/time -p -o ./bashlog zip ${13} -qq -r analyse_simulations_STICS analyse_simulations_STICS && 42 #/usr/bin/time -p -o ./bashlog zip ${13} -qq -r analyse_simulations_STICS analyse_simulations_STICS &&
38 /usr/bin/time -p -o ./bashlog 7z a -tzip -mx=1 -mmt=$3 analyse_simulations_STICS analyse_simulations_STICS && 43 /usr/bin/time -p -o ./bashlog 7z a -tzip -mx=1 -mmt=$3 analyse_simulations_STICS analyse_simulations_STICS &&
39 echo "Step 2, time to zip the results:" && 44 echo "Step 2, time to zip the results:" &&
40 echo "================================" && 45 echo "================================" &&
41 cat ./bashlog && 46 cat ./bashlog &&
42 echo "================================" && 47 echo "================================" &&
43 cp analyse_simulations_STICS.zip ${16} && 48 cp analyse_simulations_STICS.zip ${16} &&
44 rm -rf analyse_simulations_STICS && 49 rm -rf analyse_simulations_STICS &&
45 cd .. && 50 cd ..)
51 fi) &&
46 (if [ "${14}" != "yes" ]; 52 (if [ "${14}" != "yes" ];
47 then 53 then
48 (cd WS && ls | grep -e '^[0-9]*\.[0-9]*$' | xargs -i rm {}) && 54 (cd WS && ls | grep -e '^[0-9]*\.[0-9]*$' | xargs -i rm {}) &&
49 mv WS $WSname && 55 mv WS $WSname &&
50 /usr/bin/time -p -o ./bashlog zip ${13} -y -q -r $WSname $WSname && 56 /usr/bin/time -p -o ./bashlog zip ${13} -y -q -r $WSname $WSname &&