Mercurial > repos > siwaa > redelac_stics_t

comparison redelacSticsTool.xml @ 25:6839c9c8555e draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit c5185e664764135c4b9950fa7579e80e6f44f3d6"
author siwaa
date Tue, 01 Sep 2026 08:15:07 +0000
parents 0e673be917e3
children e4fa8e333e81
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24:0e673be917e3 25:6839c9c8555e
1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.26"> 1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.27">
2 <description>to run Stics for REDELAC</description> 2 <description>to run Stics for REDELAC</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002 4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002
5 </container> 5 </container>
6 </requirements> 6 </requirements>
20 #if $REDELAC.optim == 'optim': 20 #if $REDELAC.optim == 'optim':
21 parallel=${$REDELAC.parallel} && 21 parallel=${$REDELAC.parallel} &&
22 #else 22 #else
23 parallel=sequential && 23 parallel=sequential &&
24 #end if 24 #end if
25 bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan} ${outpuType} ${S3.S3} s3://${Bucket}/${objectPath} 25 bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan} ${outpuType} ${S3.S3} s3://${S3.Bucket}/${S3.objectPath}
26 ]]> 26 ]]>
27 </command> 27 </command>
28 <inputs> 28 <inputs>
29 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/> 29 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/>
30 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/> 30 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/>