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comparison config/internal_variables_v10.csv @ 0:7f8f474a7bd7 draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
author siwaa
date Tue, 06 Feb 2024 09:21:00 +0000
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1 name;definition;unit;name in code;english name;who
2 A_LAI;shapes of the senescence curve;SD;;;DR
3 absodrp;variable relecting the nitrogen status of the crop from the starting date of filling of harvested organs;SD;absodrp;;FF
4 absz;actual N uptake in each elementary soil layer;kg N ha-1 day-1;absz;;FF
5 albsol;albedo of the soil;SD;albsol;;ML
6 alloresp;daily coeffiscient of allocation of remobilised biomass between structural and reserves pools of perennial organs;SD;alloresp;;LS
7 amplsurf;daily thermal amplitude at the surface;degreesC;amplsurf;;JL
8 amplz;daily thermal amplitude;degreesC;amplz;;JL
9 azorac;amount of mineral nitrogen in the rooting zone;kg N ha-1;azorac;;FF
10 B_LAI;shapes of the growth curve;SD;;;DR
11 bpsisol;retention curve parameter 2;SD;bpsisol;;JL
12 CCper;carbon concentration in perennial organs;g C kg-1 DM;CCper;;FF
13 CCrac;carbon concentration in roots;g C kg-1 DM;CCRac;;FF
14 coeflev;ratio between the emerged and the germinated density depending on non-optimal water content and temperature conditions;SD;coeflev (l.268 de Stics_levee.f90);;DR
15 coeflevb;ratio between the emerged and the germinated density depending on the crust layer;SD;coeflev (l.270 de Stics_levee.f90);;ML
16 concN;mean nitrate concentration in each elementary soil layer;kg N ha-1 mm-1 water;concN;;FF
17 conv;daily convection flow of N in each elementary soil layer;kg N ha-1 day-1;conv;;FF
18 crust;indicator of crust conditions at the soil surface;0/1;null;;DR
19 CsurNper;C/N ratio of the storage organs;SD;;;DR
20 CsurNresid;C/N ratio of falling leaves;SD;CsurNresid;CN_ratio_falling_leaves;DR
21 CsurNressuite;C/N ratio of calculated crop residue for the next crop;SD;CsurNressuite;CN_ratio_residu_returning_in_soil;DR
22 CsurNsol;C to N ratio of soil throughout time;SD;CsurNsol;;FF
23 cuh;chilling hourly units;degrees C;cuh;;DR
24 cumoffrN;sum of nitrogen soil supply over the profile;kg N ha-1;cumoffrN;sum_soil_N_supply;DR
25 da;bulk soil density;g cm-3;daz??;bulk_soil_density;AM
26 DELTABSO;nitrogen dependant biomass growth;t ha-1 day-1;?;;AM variable
27 deltai_1;daily increase of the green leaf index for determinate crops;m2 leaf m-2 soil;?;;AM
28 deltai_2;daily increase of the green leaf index for indeterminate crops;m2 leaf m-2 soil;?;;AM
29 deltai_dens; density component of deltai; plant m-2; ??; density_component_deltai;AM
30 deltai_dev;phasic development component of deltai;m2 plant-1 degree.day-1;;deltai_dev;AM
31 deltai_stress;stress component of deltai;SD;;deltai_stress;AM
32 deltai_T;thermal component of deltai;degree.days;;deltai_T;AM
33 deltaimax;maximum increase in leaf expansion;m2 leaf m-2 soil;?;;AM
34 DELTAMSRESEN;senescence rate of residual dry matter after forage crop cutting;t DM ha-1 day-1;?;;AM
35 deltat;gradient of the relationship between saturation pressure and temperature;mbars;deltat;saturation_deficit;DR
36 deltatemp;difference in mean daily temperature inside and outside a greenhouse;degrees C;deltatemp;;ML
37 deltaz_stress;Stress component of deltaz;SD;??;stress_component_deltaz;AM
38 deltaz_T;Thermal component of deltaz;cm day-1;??;thermal_component_deltaz;AM
39 densiteger;density of germinated plants;plants.m-2;densiteger;;ML
40 densitelev;density of emerged plants;plants.m-2;densitelev;;ML
41 diff;diffusion flow of N in each elementary soil layer;kg N ha-1 day-1;diff;;FF
42 difNe;effective diffusion coefficient of nitrate in soil;cm2 day-1;diff;;FF
43 dltafv;daily biomass partitioning to the structural part of green leaves;t DM ha-1;dltafv;;LS
44 dltamsrac;daily root gowth;t DM ha-1 day-1;dltamsrac;;FF
45 dltamsracmort;daily dead root biomass on the root depth;t DM ha-1 day-1;dltamsracmort;dailydeadrootbiomass?;DR
46 dltaQCracmort; Cumulative amount of C lost by dead roots over the soil profile;kg N ha-1 day-1;;;DR
47 dltaQNracmort; Cumulative amount of N lost by dead roots over the soil profile;kg N ha-1 day-1;;;DR
48 dltaremobsen;daily biomass remobilised during leaves senescence;t DM ha-1;dltaremobsen;;LS
49 dltares;daily biomass partitioning to the temporary reserves;t DM ha-1;deltares;;LS
50 dltaresper;daily biomass remobilised from temporary reserves allocated to perennial organs reserves;t DM ha-1;dltaresper;;LS
51 dltarestemp;daily biomass remobilised from temporary reserves to perennial organs;t DM ha-1;dltarestemp;;LS
52 dltarestemp2;daily biomass remobilised from temporary reserves to perennial organs;t DM ha-1;dltarestemp;;LS
53 dltat;daily biomass partitioning to the structural part of stems;t DM ha-1;dltat;;LS
54 dos;saturation deficit within the canopy;mbars;dos;;ML
55 dpHvol;increase of soil pH after manure application;SD;dpHvol;;FF
56 dpHvolm;maximum pH increase following the application of slurry (taking into account the amount of inorganic N applied) ;SD;dpHvolm;;FF
57 drlsenf;length of dead fine roots in layer iz on day n;cm cm-2 soil;;;DR
58 drlseng;length of dead coarse roots in layer iz on day n;cm cm-2 soil;;;DR
59 dsat;air saturation deficit;mbars;dsat;air_saturation_deficit;DR
60 DURAGE;natural lifespan of leaves;Q10;?;;AM
61 DURVIEFv;maximal lifespan of an adult leaf;Q10;?;;AM
62 DURVIEIp;lifespan of a young leal (at the AMF stage) expressed as a proportion of DURVIEF;SD;?;;AM
63 E;snow compaction parameter;mm mm-1 day-1;E;E_snow_compaction;DR
64 Edirectm;maximum value of Edirect;mm day-1;Edirectm;;ML
65 effN;Nitrogen use efficiency;SD;effN;NUE;DR
66 elong;elongation of the coleoptile;cm;elong;;DR
67 emissa;emissivity of the atmosphere;0-1;emissa;;ML
68 epz;daily transpiration flow in each elementary soil layer;mm day-1;epz;;FF
69 ePT(t);potential evapotranspiration according to Priestley-Taylor formula;mm day-1;pas dans le code;;ML
70 estimet;evapotranspiration estimated from the water balance for the previous day and the climatic demand of the day in case of greenhouse;mm day-1;estimet;;ML
71 esz;evaporation soil profile;mm day-1 cm-1;esz;;ML
72 etmax;maximum value of daily evaporation flux;W m-2;etmax;;ML
73 etmin;minimum value of daily evaporation flux;W m-2;etmin;;ML
74 FGELJUV;frost index acting on LAI during the juvenile phase;SD;?;;AM
75 fgellev;frost index acting on plant density during the plantlet phase;SD;fgellev;;DR
76 FGELVEG;frost index acting on LAI during the vegetative phase;SD;?;;AM
77 fh;moisture factor on humus and residue decomposition rates;SD;fh;;FF
78 fluxrac;potential N uptake rate in each elementary soil layer;kg N ha-1 day-1;fluxrac;;FF
79 fluxsol;daily soil N supply in each elementary soil layer;kg N ha-1 day-1;fluxsol;;FF
80 FPH;soil pH effect on the volatilisation;pH;volmax;volatilisation_pH_reduction;DR
81 Fr;ratio of rain in repartition between rain and snow rain;0-1;?;;DR
82 fracinsol;insolation fraction;0-1;fracinsol;;ML
83 fruis;proportion of run-off water above the activation threshold (pminruis);SD;fruis;;ML
84 Fs;ratio of snow in repartition between rain and snow rain;0-1;fs;;DR
85 ftempremp;thermal stress index as a function of temperature using cardinal temperatures (tminremp et tmaxremp);0-1;ftempremp;;PL
86 FsNH3;potential ammonia volatilization rate;microgram m-2 day-1;FsNH3;;FF
87 fth;temperature factor on humus mineralisation rate;SD;fth;;FF
88 ftr;temperature factor on residue decomposition rate;SD;ftr;;FF
89 gamma;psychrometrc constant;mb degreeC-1;gamma;gamma_psychometric_constant;DR
90 gmax;maximum value of daily soil heat flux;W m-2;GMAX;;ML
91 gmin;minimum value of daily soil heat flux;W m-2;GMIN;;ML
92 grainsnb;number of grains per square meter;grains m-2;??;grainsnb;BD
93 ha;residual soil water content in the sed bed;mm water cm soil-1;ha;;ML
94 HB;soil layer between the seedbe and the root front;cm;null;;DR
95 hn;wilting point mean in the seed bed;mm water cm soil-1;hn;;DR
96 hucc;elementary layer soil water content at field capacity;mm water cm soil-1;hucc;;JL
97 HCUM;available water over the rooting zone;mm water g soil-1 x 100;pas dans le code;;ML
98 humin;elementary layer soil water content at wilting point;mm water cm soil-1;humin;;JL
99 humirac;influence of soil water content on germination and root growth;SD;humirac;soil_water_content_germination_roor;AM
100 humsol;soil moisture;mm water cm soil-1;humsol;;DR
101 hur;microporosity elementary layer soil water content;mm water cm soil-1;hur;;JL
102 hx;mean water content at field capacity in the sed bed;mm water cm soil-1;hx;;DR
103 ilets;date of the plantlet stage;days;ilets;;DR
104 IMB;date of the beginning of seed moistening;days;null;;DR
105 INNI;instantaneous nitrogen index;SD;?;;AM variable
106 jvi;vernalizing contribution of a given day;nb days;;;ML
107 K;melting rate;mm degrees C-1 day-1;K;K_snow;DR
108 K_LAI;maximal LAI produced;m2 m-2;;;DR
109 K2;actual mineralisation rate of humus;day-1;K2;;FF
110 K2hum;potential mineralisation rate of humus;day-1;K2hum;;FF
111 kgdiffus;proportion of diffusive radiation reaching the soil;SD;?;;AM
112 kgdirect;proportion of direct radiation reaching the soil;SD;?;;AM
113 kh;coefficient of heat transfer in the cold shelter;W m-2 K-1;kh;;ML
114 ks;coefficient of energy losses between the outside and inside of the shelter;W m-2 K-1;ks;;ML
115 L;latent heat of vaporization;MJ kg-1;L;latent_heat;DR
116 laieffcum;LAI removed;SD;laieffcum;LAI_removed;DR
117 lairognecum;sum of topped leaf area index ;m2 m-2;lairognecum;sum_lai_topped;DR
118 longsperacf;specific fine root length;cm g-1;;;DR + AM Variable calculated in chap root
119 longsperacg;specific coarse root length;cm g-1;;;DR + AM Variable calculated in chap root
120 lracsentot; total length of senescent roots;cm root cm-2 soil; lracsentot; total_death_root;AM devrait etre dans variable
121 lracsenz; death root length density at depth z;cm root cm-3 soil; lracsenz; death_root_length_density_z;AM unite a verifier
122 lracz;efficient root length density;cm root cm-3 soil;??;efficient_root_length_density;AM
123 M;snow in the process of melting;mm day-1;M;M_melting_snow;DR
124 MASECABSO;biomass accounting for nitrogen absorption;t DM ha-1;?;;AM variable
125 mouill;water retained on the foliage;mm;mouill;water_retained_by_foliage;DR
126 mouillmulch;water retained by the vegetal mulch;mm;mouillmulch;;ML
127 Mrf;liquid water in the snow cover in the process of refreezing;mm day-1;Mrf;M_liquid_snow;DR
128 msracmort;dead root biomass on the root depth;t ha-1;deadrootbiomass?;;DR
129 nbgraingel; number of frozen grains per square meter;grains m-2;nbgraingel;;PL
130 nbgrains; number of grains per square meter;grains m-2;nbgrains;;PL
131 nbjgrauto;days of autotrophy for a moistened seed;days;nbjgrauto;;ML
132 nbjhumec;maximal period that seedcan be in a moist status without seed death occurs ;days;nbjhumec;;DR
133 NH3g;ammonia concentration in the gaseous soil phase;mol l-1;NH3g;;FF
134 NH3surf;ammonia concentration at the soil surface;microgram N m-3;NH3surf;;FF
135 nit;amount of NO3-N in an elementary layer; kg N ha-1;nit;;JL
136 nodn;coefficient used to take into account the effect of the soil mineral N content on the potential N fixation;SD;nodn;;FF
137 Nvolatorg;volatilizable NH4;kg N ha-1;Nvolatorg;;FF
138 Nvolorg;actual ammonia volatilization rate;kg N ha-1 day-1;Nvolorg;;FF devrait etre ds variables de sortie
139 offrN;mineral N available for root uptake in each elementary soil layer;kg N ha-1;offrN;;FF
140 pgraingel; weight of frozen grains per square meter;g m-2;pgraingel;;PL
141 pgrain; weight of grains per square meter;g m-2;pgrain;;PL
142 pHvol;soil surface pH varying after organic residue application (such as slurry);SD;pHvol;;FF
143 propfixpot;phenology-dependent coefficient used to calculate potential N fixation;SD;propfixpot;;FF
144 propvolat;proportion of the volatilizable N fraction of the residue;SD;propvolat;;FF
145 ps;density of the snow cover;kg m-3;ps_in;ps_snow_density;DR
146 psisol;soil potential of the elementary layer;Mpa;psisol;;JL
147 psisols;retention curve parameter 1;MPa;psisols;;JL
148 QNplantule;amount of nitrogen in the plantlet;kg N ha-1;null;;DR
149 QNplmax;maximal amount of N possible in the crop;kg N ha-1;QNplmax;maximal_N_in_plant;DR
150 raa;aerodynamic resistance between the canopy and the reference height of weather measurements;s m-1;raa;;FF
151 raamax;maximum daily value of the aerodynamic resistance between the cover et the reference level zr;W m-2;raamax;;ML
152 raamin;minimum daily value of the aerodynamic resistance between the cover et the reference level zr;W m-2;raamin;;ML
153 racinepsi;efficient root length density participating in predawn potential, located in the moist layers (PSISOL < -1.5 Mpa), else =0.;cm root cm-3 soil;racinepsi;root_psi;JL un moment racinepsi=lracz comprend pas
154 rac;resistance of the canopy boundary layer;s m-1;rac;;ML
155 Ratm;atmospheric component of the long wave radiation;MJ m-2 day-1;Ratm;;ML
156 rc;resistance of canopy;s m-1;?;;ML
157 rdiffus;diffusive radiation;MJ m-2 day-1;?;;AM
158 rdirect;direct radiation;MJ m-2 day-1;?;;AM
159 rdroit;radiation not intercepted by the crop;MJ m-2 day-1;rdroit;;AM
160 reprac;underground/total biomass partitioning coefficient;SD; reprac; root_over_total_biomass_partitioning_coefficient;AM
161 rgex;extraterrestrial radiation;MJ m-2 day-1;rgex;;ML
162 Rglo;long wave radiation;MJ m-2 day-1;RGLO;;ML
163 rgmax;maximum daily value of the global radiation;W m-2;rgmax;;ML
164 rgmin;minimum daily value of the global radiation;W m-2;rgmin;;ML
165 rl;root length density at depth z;cm root cm-3 soil; rl; root_length_density_z;AM devrait etre dans variable
166 rlf;length of fine roots in layer iz on day n;cm cm-2 soil;;;DR
167 rlg;length of coarse roots in layer iz on day n;cm cm-2 soil;;;DR
168 rlj_dens; plant density component of rlj;plant m-2; ??; plant_density_component_rlj;AM
169 rlj_dev; plant density component of rlj;m root plant-1 degree-day-1; ??; plant_density_component_rlj;AM
170 rlj_stress; stress component of root length growth rlj;SD; ??; stress_component_rlj;AM
171 rlj_T; thermal component of root length growth rlj;degreeC day-1; ??; thermal_component_of_rlj;AM
172 rljfront; root length growth at the root front; m root m-2 day-1; ??; rlj_at_root_front;AM
173 rnet_PE;Net radiation for Brunt formula;MJ m-2;rnet;net_radiation;DR
174 rnet_PT;Net radiation for Priestley-Taylor evapotranspiration calculation;MJ m-2;rnet dans calceeq;net_radiation;DR
175 rnetmax;maximum value of daily net radiation;W m-2;rnetmax dans caltcult.f90;;ML
176 rnetmin;minimum value of daily net radiation;W m-2;rnetmin dans caltcult.f90;;ML
177 rnetP;net radiation affecting the crop;MJ m-2;;;ML
178 Rsol;surface comopnent of the long wave radiation;MJ m-2 day-1;Rsolglo;;ML
179 RsRso;total to extraterrestrial radiation ratio;SD;RsRso;;AM
180 rtransmis;radiation transmistted through the crop;MJ m-2 day-1;rtransmis;;AM
181 Sdry;water in solid state in the snow cover;mm;Sdry;;PL
182 S_WE;ratio between the snow water equivalent;mm;;;DR
183 Swet;water in liquid state in the snow cover;mm;Swet;;PL
184 sat;macroporosity elementary layer soil water content;mm water cm soil-1;sat;;JL
185 SB;seed bed;cm;null;;DR
186 sbv;specific surface area of biomass;cm2 g-1;sbvmax;specific_surface_area_biomass;DR
187 sbvmax;leaf expansion allowed per unit of biomass accumulated;cm2 g-1;?;;AM
188 sla;maximum SLA (specific leaf area) of green leaves;cm2 g-1;slamax;maximum_specific_leaf_area;DR
189 somger;growing degree-days from planting in the seed bed;degrees C;somger;;DR
190 SOMSEN;current thermal time for senescence;Q10;?;;AM
191 ST_LAI;growing degree-days since emergence;degreesC;;;DR
192 stdebsenrac_p; life span of roots;degreeC day-1; ??; life_span_root; AM devrait etre dans parameters
193 SURFAO;fraction of surface in the shade;SD;?;;AM
194 SURFAS;fraction of surface in the sun;SD;?;;AM
195 surfouvre;proportion of vents related to the total surface area of the greenhouse;0-1;surfouvre;;ML
196 tair;mean air temperature (measured );degreesC;tairveille;mean_air_temperature;DR
197 TDEW;dewpoint temperature;degreesC;TDEW;;ML
198 teta;available water content in the root zone;cm3 water cm-3 soil;?;;AM variable
199 tetsen;threshold soil water content accelering senescence;cm3 water cm-3 soil;?;;AM parameter? tetstomate and teturg designed as variable? or parameter?
200 TF_LAI;growing degree-days for the point of inflexion of the complete senescence;degrees C;;;DR
201 TI_LAI;growing degree-days for the point of inflexion of the growth curve ;degrees C;;;DR
202 tmin;minimum temperature ;degreesC;tmin(n);min_air_temperature;DR
203 tnh;normalized time (day) for humus mineralization;SD;tnh;;FF
204 tpm;vapour pressure in air;mbars;tpm;;ML
205 TRECOUVMAXp;proportion of the soil covered by isolated plant;SD;?;;AM
206 tsol;soil temperature ;degrees C;tsol;Soil_temp;DR
207 TURSAL;mean water stress TURFAC experienced since emergence;SD;?;;AM
208 TVAR;saturating vapour pressure as a function of temperature;mbars;TVAR;;ML
209 Vabs;specific N absorption capacity of the roots;micromole N h-1 cm-1 root;Vabs;;FF
210 vabsmoy;Nitrogen uptake rate;Kg N ha-1 day-1;vabsmoy;Nitrogen_uptake_rate;DR
211 VABSN;nitrogen accumulation rate in the plant (uptake and fixation);kg N ha-1 day-1;?;;AM variable
212 wfps;water filled pore space;SD;wfps;;BM
213 wfpscc;water filled pore space at fied capacity;SD;wfpscc;;BM
214 wsat;total porosity;SD;wsat;;JL
215 XMULCH;thickness of mulch created by evaporation from the soil;cm;pas dans le code;;ML
216 z0;crop roughness;m;z0;;ML
217 z0s;soil or understorey crop roughness;m;z0solnu;;ML
218 zdemi;root depth that ensures at least an extraction near the soil surface of 20% of the water available;cm; zdemi; threshold_extraction_20%_water_available;AM
219 znonli;root depth if no obstacle;cm; znonli; root_depth_without_obstacle;AM
220 code_diff_rac;1 two types of roots (fine and coarse roots or 2 a single mean type of root;SD;codediffroot;;AM voir si c’est bien ce nom parameter
221 codeinstal;Technical code to describe either seedling or already installed crop;SD;codeinstal;;AM parameter
222 nhet;number of days of heterotrophy during germination;day;nhet;;AM calculé dans chap root
223 newrac;root length growth thanks to seed reserve remobilization during germination;m day-1;newrac;;AM variable calculées dans chap root
224 dis;A voir avec Nicolas;?;dis;;AM variable calculées dans chap root
225 debsenracf;thermal time units defining the begining of root senescence for fine roots;degreeC day-1;debsenracf;;AM parameter chap root
226 debsenracg;thermal time units defining the begining of root senescence for coarse roots;degreeC day-1;debsenracg;;AM parameter chap root
227 drliz;daily root length emission per elementary layer;cm root cm-3 soil;drliz;;AM variable calculées dans chap root
228 Wi;index of soil water availability (0-1);SD;;;DR
229 aevap;soil evaporation parameter combining climatic and soils aspects;mm;;;DR
230 EVAP0;accumulation of evaporative fluxes (esol, Emd, emulch);mm;;;DR
231 RNETP1;net radiation affecting the crop (use for direct evaporation);MJ m-2 day-1;;;DR
232 RNETP2;net radiation affecting the crop (use for transpiration);MJ m-2 day-1;;;DR
233 dh;displacement height;m;;;DR
234 hmin;water content at permanent wilting point of macro layer;%weight;;;DR
235 vnit;nitrification rate;mg N kg-1 day-1;vnit;;FF
236 vnitpot;potential nitrification rate;mg N kg-1 day-1;vnitpot;;FF
237 theta_sat;volumic soil water content at saturation;cm3 cm-3;theta_sat;;FF
238 devjour;daily development rate;ND;devjourfr;;PL
239 k;growth compartment;ND;i;;PL
240 croifruit;fruit growth;g m-2;croifruit;;PL
241 teaugrain;Water content of (harvested) organs;g g-1;teaugrain;;PL
242 dltazo;daily increase of grain nitrogen content;kgN.ha-1.day-1;dltazo;;PL-BD
243 potcroifruit;potential growth of a fruit;g.fruit-1.day-1;potcroifruit;;BD
244 dfr;fruit development stage of each age class;SD;dfr;;BD
245 mafraisfeuille;leaf fresh matter;t.ha-1;mafraisfeuille;;BD
246 mafraistige;structural stem fresh matter;t.ha-1;mafraistige;;BD
247 mafraisres;reserve fresh matter;t.ha-1;mafraisres;;BD
248 resperenne0;initial biomass reserve;t.ha-1;resperenne0;;BD
249 sum_eos;sum of daily maximum evaporation flux;mm;;;DR
250 z;soil elementary layer of 1 cm;cm;z;;DR