Mercurial > repos > siwaa > redelac_stics_t

comparison redelacSticsTool.bash @ 8:cbd23f8906db draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 53d19ea66881dcd272711c98940626fa6bb58075"
author siwaa
date Thu, 24 Oct 2024 17:45:22 +0000
parents e0d592bb516e
children
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7:200c20fddc80 8:cbd23f8906db
21 cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv && 21 cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
22 cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv && 22 cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
23 cd JavaSTICS-1.5.1-STICS-10.0.0 && 23 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
24 (if [ "${11}" != "noAdditionalPlantOrConfig" ]; 24 (if [ "${11}" != "noAdditionalPlantOrConfig" ];
25 then 25 then
26 unzip -q -o ${11} 26 unzip -q -o ${11} &&
27 cp -r plant WS &&
28 cp config/param_gen.xml WS &&
29 cp config/param_newform.xml WS
27 fi) && 30 fi) &&
28 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsTool.R $1 $2 $3 ${15} && 31 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsTool.R $1 $2 $3 ${15} &&
29 echo "Step 1, time to run the R script:" && 32 echo "Step 1, time to run the R script:" &&
30 echo "=================================" && 33 echo "=================================" &&
31 cat ./bashlog && 34 cat ./bashlog &&