# HG changeset patch
# User siwaa
# Date 1788248151 0
# Node ID 0e673be917e3de9b78154d82ed610f7f80f12cd5
# Parent  3b44cb0a1e760ace2af886ce0d6fccf71b635d00
"planemo upload for repository https://forgemia.inra.fr/redelac commit 596ce5faab821d6dcaf17fd56e002adc5be472fc"

diff -r 3b44cb0a1e76 -r 0e673be917e3 redelacSticsTool.bash
--- a/redelacSticsTool.bash	Wed Aug 19 14:35:50 2026 +0000
+++ b/redelacSticsTool.bash	Tue Sep 01 07:35:51 2026 +0000
@@ -34,6 +34,11 @@
 cat ./bashlog &&
 echo "=================================" &&
 cd WS &&
+(if [ "${19}" != "ko" ];
+ then
+     (aws s3 cp analyse_simulations_STICS "${20}" --recursive --endpoint-url "${S3_ENDPOINT}")
+ else
+(     
 #/usr/bin/time -p -o ./bashlog zip ${13} -qq -r analyse_simulations_STICS analyse_simulations_STICS &&
 /usr/bin/time -p -o ./bashlog 7z a -tzip -mx=1 -mmt=$3 analyse_simulations_STICS analyse_simulations_STICS &&
 echo "Step 2, time to zip the results:" &&
@@ -42,7 +47,8 @@
 echo "================================" && 
 cp analyse_simulations_STICS.zip ${16} &&
 rm -rf analyse_simulations_STICS &&
-cd .. &&
+cd ..)
+fi) &&
 (if [ "${14}" != "yes" ];
  then
 (cd WS && ls | grep -e '^[0-9]*\.[0-9]*$' | xargs -i rm {}) &&
diff -r 3b44cb0a1e76 -r 0e673be917e3 redelacSticsTool.xml
--- a/redelacSticsTool.xml	Wed Aug 19 14:35:50 2026 +0000
+++ b/redelacSticsTool.xml	Tue Sep 01 07:35:51 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.25">
+<tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.26">
   <description>to run Stics for REDELAC</description>
   <requirements>
     <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002
@@ -6,6 +6,12 @@
   </requirements>
   <command detect_errors="aggressive">
     <![CDATA[
+	     env &&
+	     curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" &&
+	     unzip awscliv2.zip &&
+	     ./aws/install --update -i ~/.local/aws-cli -b ~/.local/bin &&
+	     export PATH=\${HOME}/.local/bin:\${PATH} &&
+	     aws --version &&
 	     #if $additional:
                 additional=${additional} &&
 	     #else
@@ -16,7 +22,7 @@
              #else
                 parallel=sequential &&
              #end if
-	        bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan} ${outpuType}
+	        bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan} ${outpuType} ${S3.S3} s3://${Bucket}/${objectPath}
      ]]>
   </command>
   <inputs>
@@ -44,10 +50,20 @@
       <option value="rds+csv">rds+csv</option>
       <option value="both" selected="true">both</option>
     </param>
+     <conditional name="S3">
+      <param name="S3" type="boolean" checked="true" truevalue="ok" falsevalue="ko" label="To store directly on a Tenant"/>
+      <when value="ok">
+	<param name="objectPath" type="text" value="Simulations-stics/sous-territoires/PDF/ICHEC-EC-EARTH" label="a path to the object"/>
+        <param name="Bucket" type="text" value="dairyfit-donnees-produites" label="the bucket where to store"/>
+      </when>
+      <when value="ko">
+      </when>
+    </conditional>
   </inputs>
   <outputs>
     <data format="zip" name="SimulationResults"
           label="SticsOnResults">
+            <filter>S3.S3 == False</filter>
     </data>
     <data format="zip" name="GeneratedWorkspace"
           label="GeneratedWorkspace$">