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comparison tool_SUNFLO.xml @ 0:53d753cb6b81 draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 67ecf5a057de84342a865b7346fe9d096e795298-dirty"
author siwaa
date Wed, 15 Dec 2021 13:10:41 +0000
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1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.0.0">
2 <description></description>
3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:187cf18876225903f7ab06915374a0277ad83130</container>
5 </requirements>
6 <command detect_errors="aggressive">
7 unzip ${input_meteo};
8 /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
9 zip temp_results.zip simresults_*.txt;
10 cp temp_results.zip ${simresults};
11 </command>
12 <inputs>
13 <param name="input_meteo" type="data" format="zip" label="Wheater serie input files (zip file)"/>
14 <param name="file_input" type="data" format="csv" label="Crop model input values"/>
15 <param name="file_outputs" type="data" format="csv" label="Outputs to simulate"/>
16 </inputs>
17 <outputs>
18 <data format="zip" name="simresults" />
19 </outputs>
20 <help><![CDATA[
21 SUNFLO crop model simulations
22 =============================
23
24 Inputs:
25 -------
26
27 - Zip file of wheather series
28 - Input values of the crop model (1 simulation per row)
29 - Identification of the crop model output to simulate.
30
31 Outputs:
32 --------
33
34 - Zip file of the crop model simulation values (1 file per output)
35
36 Example:
37 --------
38
39 - Copy to your history files 'sunflo_meteo.zip', 'sunflo_input.csv' and 'sunflo_output.csv' from the SUNFLO shared dataset.
40 - Fill file names and choose the adequate number of cores.
41 - And then execute
42
43 Credits:
44 --------
45
46 - Author: Ronan Trépos ronan.trepos@inrae.fr
47 - Wrapper Maintainer: Ronan Trépos ronan.trepos@inrae.fr
48 - Tool Maintainer: Ronan Trépos ronan.trepos@inrae.fr
49 - Copyright: INRAE]]>
50 </help>
51 </tool>
52