Mercurial > repos > siwaa > sunflo
comparison tool_SUNFLO.xml @ 2:a08cdfcedd4c draft
"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/0f6fde80754b9da43c5f06a964ffcd9d0d135803 commit 0f6fde80754b9da43c5f06a964ffcd9d0d135803-dirty"
author | siwaa |
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date | Mon, 29 Aug 2022 10:10:12 +0000 |
parents | 935e06766216 |
children | eec09c643933 |
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1:935e06766216 | 2:a08cdfcedd4c |
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1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.0.0"> | 1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.1.0"> |
2 <description></description> | 2 <description></description> |
3 <requirements> | 3 <requirements> |
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21</container> | 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.1</container> |
5 </requirements> | 5 </requirements> |
6 <command detect_errors="aggressive"> | 6 <command detect_errors="aggressive"> |
7 unzip ${input_meteo}; | 7 unzip ${input_meteo}; |
8 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; | 8 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; |
9 zip temp_results.zip simresults_*.txt; | 9 zip temp_results.zip simresults_*.txt; |