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comparison tool_SUNFLO.xml @ 5:b4b957727dec draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/cc4805e05de7961381e752d96eff34bf06144f48 commit cc4805e05de7961381e752d96eff34bf06144f48-dirty"
author patrick_chabrier
date Mon, 17 Jun 2024 11:04:10 +0000
parents 64b9de83b8e6
children e3e0c7e0f3cf
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4:64b9de83b8e6 5:b4b957727dec
1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.3.0"> 1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.3.1">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.3</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.3</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 unzip ${input_meteo}; 7 unzip ${input_meteo};
8 dos2unix --allow-chown *
8 dos2unix -n ${file_input} internal_inputSUNFLO.csv; 9 dos2unix -n ${file_input} internal_inputSUNFLO.csv;
9 dos2unix -n ${file_outputs} internal_outputSUNFLO.csv; 10 dos2unix -n ${file_outputs} internal_outputSUNFLO.csv;
10 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_simple.vpz sunflo internal_inputSUNFLO.csv internal_outputSUNFLO.csv \${GALAXY_SLOTS:-2}"; 11 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_simple.vpz sunflo internal_inputSUNFLO.csv internal_outputSUNFLO.csv \${GALAXY_SLOTS:-2}";
11 zip temp_results.zip simresults_*.txt; 12 zip temp_results.zip simresults_*.txt;
12 cp temp_results.zip ${simresults}; 13 cp temp_results.zip ${simresults};