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comparison tool_SUNFLO.xml @ 3:eec09c643933 draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/e3ed8beeb31a8c8b7e90d80ae3267feb06fc3c90 commit e3ed8beeb31a8c8b7e90d80ae3267feb06fc3c90-dirty"
author siwaa
date Tue, 27 Sep 2022 07:54:08 +0000
parents a08cdfcedd4c
children 64b9de83b8e6
comparison
equal deleted inserted replaced
2:a08cdfcedd4c 3:eec09c643933
1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.1.0"> 1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.2.0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.1</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.2</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 unzip ${input_meteo}; 7 unzip ${input_meteo};
8 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; 8 dos2unix -n ${file_input} internal_inputSUNFLO.csv;
9 dos2unix -n ${file_outputs} internal_outputSUNFLO.csv;
10 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_simple.vpz sunflo internal_inputSUNFLO.csv internal_outputSUNFLO.csv \${GALAXY_SLOTS:-2}";
9 zip temp_results.zip simresults_*.txt; 11 zip temp_results.zip simresults_*.txt;
10 cp temp_results.zip ${simresults}; 12 cp temp_results.zip ${simresults};
11 </command> 13 </command>
12 <inputs> 14 <inputs>
13 <param name="input_meteo" type="data" format="zip" label="Wheater serie input files (zip file)"/> 15 <param name="input_meteo" type="data" format="zip" label="Wheater serie input files (zip file)"/>
24 <param name="file_outputs" value="inputs/sunflo_output.csv" ftype="csv" /> 26 <param name="file_outputs" value="inputs/sunflo_output.csv" ftype="csv" />
25 <output name="simresults"> 27 <output name="simresults">
26 <assert_contents> 28 <assert_contents>
27 <has_archive_member path="simresults_LAI.txt"> 29 <has_archive_member path="simresults_LAI.txt">
28 <has_text text="0;0;0;0" /> 30 <has_text text="0;0;0;0" />
29 <has_text text="0.007252155941" /> 31 <has_text text="0.007303977383" />
30 </has_archive_member> 32 </has_archive_member>
31 <has_archive_member path="simresults_RDT.txt"> 33 <has_archive_member path="simresults_RDT.txt">
32 <has_text text="29.639416530" /> 34 <has_text text="25.004733605" />
33 <has_text text="29.411414411" /> 35 <has_text text="25.084471273" />
34 </has_archive_member> 36 </has_archive_member>
35 </assert_contents> 37 </assert_contents>
36 </output> 38 </output>
37 </test> 39 </test>
38 </tests> 40 </tests>