diff tool_SUNFLO.xml @ 1:935e06766216 draft

"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty"
author siwaa
date Thu, 25 Aug 2022 10:49:25 +0000
parents 53d753cb6b81
children a08cdfcedd4c
line wrap: on
line diff
--- a/tool_SUNFLO.xml	Wed Dec 15 13:10:41 2021 +0000
+++ b/tool_SUNFLO.xml	Thu Aug 25 10:49:25 2022 +0000
@@ -1,11 +1,11 @@
 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.0.0">
   <description></description>
   <requirements>
-    <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:187cf18876225903f7ab06915374a0277ad83130</container>
+    <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21</container>
   </requirements>
   <command detect_errors="aggressive">
     unzip ${input_meteo}; 
-    /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
+    /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
     zip temp_results.zip  simresults_*.txt;
     cp temp_results.zip ${simresults};
   </command>
@@ -17,6 +17,26 @@
   <outputs>
     <data format="zip" name="simresults" />
   </outputs>
+  <tests>
+    <test>
+    <param name="input_meteo" value="inputs/sunflo_meteo.zip" ftype="zip" />
+    <param name="file_input" value="inputs/sunflo_input.csv" ftype="csv" />
+    <param name="file_outputs" value="inputs/sunflo_output.csv" ftype="csv" />
+    <output name="simresults">
+    <assert_contents>
+      <has_archive_member path="simresults_LAI.txt">
+	<has_text text="0;0;0;0" />
+	<has_text text="0.007252155941" />
+      </has_archive_member>
+      <has_archive_member path="simresults_RDT.txt">
+	<has_text text="29.639416530" />
+	<has_text text="29.411414411" />
+      </has_archive_member>
+    </assert_contents>
+    </output>
+  </test>
+</tests>
+
   <help><![CDATA[
 SUNFLO crop model simulations
 =============================