Mercurial > repos > siwaa > sunflo
diff tool_SUNFLO.xml @ 1:935e06766216 draft
"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty"
author | siwaa |
---|---|
date | Thu, 25 Aug 2022 10:49:25 +0000 |
parents | 53d753cb6b81 |
children | a08cdfcedd4c |
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--- a/tool_SUNFLO.xml Wed Dec 15 13:10:41 2021 +0000 +++ b/tool_SUNFLO.xml Thu Aug 25 10:49:25 2022 +0000 @@ -1,11 +1,11 @@ <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.0.0"> <description></description> <requirements> - <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:187cf18876225903f7ab06915374a0277ad83130</container> + <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21</container> </requirements> <command detect_errors="aggressive"> unzip ${input_meteo}; - /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; + /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; zip temp_results.zip simresults_*.txt; cp temp_results.zip ${simresults}; </command> @@ -17,6 +17,26 @@ <outputs> <data format="zip" name="simresults" /> </outputs> + <tests> + <test> + <param name="input_meteo" value="inputs/sunflo_meteo.zip" ftype="zip" /> + <param name="file_input" value="inputs/sunflo_input.csv" ftype="csv" /> + <param name="file_outputs" value="inputs/sunflo_output.csv" ftype="csv" /> + <output name="simresults"> + <assert_contents> + <has_archive_member path="simresults_LAI.txt"> + <has_text text="0;0;0;0" /> + <has_text text="0.007252155941" /> + </has_archive_member> + <has_archive_member path="simresults_RDT.txt"> + <has_text text="29.639416530" /> + <has_text text="29.411414411" /> + </has_archive_member> + </assert_contents> + </output> + </test> +</tests> + <help><![CDATA[ SUNFLO crop model simulations =============================