<tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.0.0">
  <description></description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:latest</container>
  </requirements>
  <command detect_errors="aggressive">
    unzip ${input_meteo}; 
    /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
    zip temp_results.zip  simresults_*.txt;
    cp temp_results.zip ${simresults};
  </command>
  <inputs>
    <param name="input_meteo" type="data" format="zip" label="Wheater serie input files (zip file)"/>
    <param name="file_input" type="data" format="csv" label="Crop model input values"/>
    <param name="file_outputs" type="data" format="csv" label="Outputs to simulate"/>
  </inputs>
  <outputs>
    <data format="zip" name="simresults" />
  </outputs>
  <help><![CDATA[
SUNFLO crop model simulations
=============================

Inputs:
-------

- Zip file of wheather series
- Input values of the crop model (1 simulation per row)
- Identification of the crop model output to simulate.

Outputs:
--------

- Zip file of the crop model simulation values (1 file per output)

Example:
--------

- Copy to your history files 'sunflo_meteo.zip', 'sunflo_input.csv' and 'sunflo_output.csv' from the SUNFLO shared dataset.
- Fill file names and choose the adequate number of cores.
- And then execute 

Credits:
--------

-  Author: Ronan Trépos ronan.trepos@inrae.fr
-  Wrapper Maintainer: Ronan Trépos ronan.trepos@inrae.fr
-  Tool Maintainer: Ronan Trépos ronan.trepos@inrae.fr
-  Copyright: INRAE]]>
  </help>
</tool>