# HG changeset patch # User siwaa # Date 1661424565 0 # Node ID 935e06766216ffc214b30c269cdb4758188b49b2 # Parent 53d753cb6b81fa7969ad60ec8f8e459c70daf88a "planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty" diff -r 53d753cb6b81 -r 935e06766216 test-data/inputs/sunflo_input.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/inputs/sunflo_input.csv Thu Aug 25 10:49:25 2022 +0000 @@ -0,0 +1,5 @@ +sunflo_climat.meteo_file;itk.densite +exmeteo_1.txt;7 +exmeteo_1.txt;5 +exmeteo_2.txt;7 +exmeteo_2.txt;5 diff -r 53d753cb6b81 -r 935e06766216 test-data/inputs/sunflo_meteo.zip Binary file test-data/inputs/sunflo_meteo.zip has changed diff -r 53d753cb6b81 -r 935e06766216 test-data/inputs/sunflo_output.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/inputs/sunflo_output.csv Thu Aug 25 10:49:25 2022 +0000 @@ -0,0 +1,3 @@ +id;path;integration +RDT;viewStatic/sunflo,sunflo_bio,performances:elaboration_rendement.photo_RDT_aFinMATURATION;last +LAI;viewDbg/sunflo,sunflo_bio:croissance_plante.LAI;all diff -r 53d753cb6b81 -r 935e06766216 tool_SUNFLO.xml --- a/tool_SUNFLO.xml Wed Dec 15 13:10:41 2021 +0000 +++ b/tool_SUNFLO.xml Thu Aug 25 10:49:25 2022 +0000 @@ -1,11 +1,11 @@ - docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:187cf18876225903f7ab06915374a0277ad83130 + docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21 unzip ${input_meteo}; - /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; + /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; zip temp_results.zip simresults_*.txt; cp temp_results.zip ${simresults}; @@ -17,6 +17,26 @@ + + + + + + + + + + + + + + + + + + + + - - - docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:latest - - - unzip ${input_meteo}; - /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; - zip temp_results.zip simresults_*.txt; - cp temp_results.zip ${simresults}; - - - - - - - - - - - - - diff -r 53d753cb6b81 -r 935e06766216 tool_defaults_SUNFLO.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_defaults_SUNFLO.xml Thu Aug 25 10:49:25 2022 +0000 @@ -0,0 +1,41 @@ + + + + docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21 + + + /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R sunflo_web.vpz sunflo"; + cp file_default_input.csv ${inputs}; + cp file_default_output.csv ${outputs}; + + + + + + + + + + + + + + + + + + + + + + + + + Sunflo tool" +]]> + + +