# HG changeset patch
# User siwaa
# Date 1661424565 0
# Node ID 935e06766216ffc214b30c269cdb4758188b49b2
# Parent 53d753cb6b81fa7969ad60ec8f8e459c70daf88a
"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty"
diff -r 53d753cb6b81 -r 935e06766216 test-data/inputs/sunflo_input.csv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/inputs/sunflo_input.csv Thu Aug 25 10:49:25 2022 +0000
@@ -0,0 +1,5 @@
+sunflo_climat.meteo_file;itk.densite
+exmeteo_1.txt;7
+exmeteo_1.txt;5
+exmeteo_2.txt;7
+exmeteo_2.txt;5
diff -r 53d753cb6b81 -r 935e06766216 test-data/inputs/sunflo_meteo.zip
Binary file test-data/inputs/sunflo_meteo.zip has changed
diff -r 53d753cb6b81 -r 935e06766216 test-data/inputs/sunflo_output.csv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/inputs/sunflo_output.csv Thu Aug 25 10:49:25 2022 +0000
@@ -0,0 +1,3 @@
+id;path;integration
+RDT;viewStatic/sunflo,sunflo_bio,performances:elaboration_rendement.photo_RDT_aFinMATURATION;last
+LAI;viewDbg/sunflo,sunflo_bio:croissance_plante.LAI;all
diff -r 53d753cb6b81 -r 935e06766216 tool_SUNFLO.xml
--- a/tool_SUNFLO.xml Wed Dec 15 13:10:41 2021 +0000
+++ b/tool_SUNFLO.xml Thu Aug 25 10:49:25 2022 +0000
@@ -1,11 +1,11 @@
- docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:187cf18876225903f7ab06915374a0277ad83130
+ docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21
unzip ${input_meteo};
- /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
+ /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
zip temp_results.zip simresults_*.txt;
cp temp_results.zip ${simresults};
@@ -17,6 +17,26 @@
+
+
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+
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+
+
-
-
- docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:latest
-
-
- unzip ${input_meteo};
- /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
- zip temp_results.zip simresults_*.txt;
- cp temp_results.zip ${simresults};
-
-
-
-
-
-
-
-
-
-
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-
-
diff -r 53d753cb6b81 -r 935e06766216 tool_defaults_SUNFLO.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_defaults_SUNFLO.xml Thu Aug 25 10:49:25 2022 +0000
@@ -0,0 +1,41 @@
+
+
+
+ docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21
+
+
+ /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R sunflo_web.vpz sunflo";
+ cp file_default_input.csv ${inputs};
+ cp file_default_output.csv ${outputs};
+
+
+
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+ Sunflo tool"
+]]>
+
+
+