Mercurial > repos > siwaa > tabular_file_checker
comparison tfc.xml @ 0:9e72c0cef1f7 draft
"planemo upload for repository https://forgemia.inra.fr/record/tfc-/tree/main/tools/tfc commit 8ef27130c1fef3ba1e2dfa4a89d4d324b943a3b4"
| author | siwaa |
|---|---|
| date | Mon, 10 Jul 2023 14:15:29 +0000 |
| parents | |
| children | fb2d0a0a55eb |
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| -1:000000000000 | 0:9e72c0cef1f7 |
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| 1 <tool id="tfc" name="TabularFileChecker" version="1.0.0"> | |
| 2 <description>to check tabular files content and structure</description> | |
| 3 <requirements> | |
| 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/tfc:latest</container> | |
| 5 </requirements> | |
| 6 <command detect_errors="aggressive"> | |
| 7 <![CDATA[ | |
| 8 cp ${tabularInput} ./input.csv && | |
| 9 tfc genschema genschema ./input.csv && | |
| 10 cp ./input*.json ${schema} | |
| 11 ]]> | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <param name="tabularInput" type="data" format="csv" label="Select a csv file to check"/> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="json" name="schema" label="${tabularInput.name} schema"/> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 </tests> | |
| 21 <help> | |
| 22 Documentation | |
| 23 ------------- | |
| 24 TODO | |
| 25 | |
| 26 Credits | |
| 27 ------- | |
| 28 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr | |
| 29 - Copyright: INRAE | |
| 30 </help> | |
| 31 </tool> |