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"planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
author siwaa
date Fri, 03 Jul 2026 16:21:27 +0000
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c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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1 <tool id="toS3" name="toS3" version="1.0.1">
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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2 <description>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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3 To send to a S3 storage
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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4 </description>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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5 <command detect_errors="exit_code">
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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6 unzip ${inputData};
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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7 ls;
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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8 aws s3 cp analyse_simulations_STICS s3://${Bucket}/${objectPath} --recursive --endpoint-url \${S3_ENDPOINT};
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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9 echo "bla" > ${output};
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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10 </command>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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11 <inputs>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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12 <param name="inputData" type="data" format="zip" label="zip data file"/>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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13 <param name="objectPath" type="text" value= "RM/ICHEC-EC-EARTH" label="a path to the object"/>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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14 <param name="Bucket" type="text" value="dairyfit-simulations" label="the bucket where to store"/>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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15 </inputs>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
siwaa
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16 <outputs>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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17 <data format="text" name="output" label="dummy"/>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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18 </outputs>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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19 <tests>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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20 </tests>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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21 <help>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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22 Documentation
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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23 -------------
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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24 A tool to unzip and send a folder to S3
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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25
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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26 Credits
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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27 -------
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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28 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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29 - Tool Site: https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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30 - Copyright: INRAE
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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31 </help>
c1bdbc4234d1 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 61853eb25d47c0fb4d716af16d3382fb24e7b927"
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32 </tool>