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comparison wine_quality.xml.VENDREDI @ 2:c1b75945752a draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author siwaa
date Mon, 09 Dec 2024 10:31:09 +0000
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1:c3841488b88d 2:c1b75945752a
1 <tool id="wine_quality" name="wine_quality" version="1.0.0">
2
3 <description>wine_quality</description>
4
5 <requirements>
6
7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container>
9
10 <!-- image locale
11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
12
13 </requirements>
14
15 <environment_variables>
16 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
17 </environment_variables>
18 <command detect_errors="aggressive">
19 <![CDATA[
20 . /fidle-tp/fidle-env/bin/activate;
21 mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir;
22 mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir;
23 /bin/bash -c "python3 $__tool_directory__/wine_quality.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data '${datajson_text}'";
24 cp OUTPUTS/quality.txt ${quality_txt};
25 ]]>
26 </command>
27
28 <inputs>
29 <param name="datajson_text" optional="false" type="text" area="true"
30 label="Data of wine whose quality to be predicted (json as text)"/>
31 <param name="model_ckpt" optional="false" type="data" format="ckpt"
32 label="model_ckpt model file (.ckpt)"/>
33 <param name="norm_config_json" optional="false" type="data" format="json"
34 label="norm_config normalization configuration (.json)"/>
35 </inputs>
36
37 <outputs>
38 <data format="txt" name="quality_txt" label="quality (.txt)"/>
39 </outputs>
40
41 <tests>
42 </tests>
43
44 <help><![CDATA[
45
46 wine_quality.xml
47
48 ===========================
49
50 Code:
51
52 ----
53
54 - wine_quality.py
55
56 Inputs:
57
58 -------
59
60 - data json as text : data of wine for which quality is going to be predicted.
61
62 - example :
63
64 - {"fixed acidity": 11.2, "volatile acidity": 0.28, "citric acid": 0.56, "residual sugar": 1.9, "chlorides": 0.075, "free sulfur dioxide": 17, "total sulfur dioxide": 60, "density": 0.998, "pH": 3.16, "sulphates": 0.58, "alcohol": 9.8}
65
66 - Model file (.ckpt)
67
68 - Normalization configuration file (.json)
69
70 Outputs:
71
72 --------
73
74 - Quality file (.txt)
75
76 Credits:
77
78 --------
79
80 - Author: Nathalie Rousse nathalie.rousse@inrae.fr
81 - Copyright: INRAE
82
83 ]]>
84 </help>
85
86 </tool>