Mercurial > repos > siwaa > wine_quality_predict

comparison wine_quality_predict.xml.VENDREDI @ 4:e88a46bee6e5 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author siwaa
date Mon, 09 Dec 2024 10:53:55 +0000
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3:01bf4f689614 4:e88a46bee6e5
1 <tool id="wine_quality_predict" name="wine_quality_predict" version="1.0.0">
2
3 <description>wine_quality_predict</description>
4
5 <requirements>
6
7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container>
9
10 <!-- image locale
11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
12
13 </requirements>
14
15 <environment_variables>
16 </environment_variables>
17 <command detect_errors="aggressive">
18 <![CDATA[
19
20 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
21 mkdir datasets-fidle &&
22 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
23 mkdir ipython_dir &&
24 export IPYTHONDIR=\$(realpath -s ipython_dir) &&
25 ipython profile create default &&
26 mkdir cache_dir &&
27 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
28 mkdir mpl_dir &&
29 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
30 python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} &&
31 cp OUTPUTS/report.json ${report_json}"
32 ]]>
33 </command>
34
35 <inputs>
36 <param name="data_json" optional="false" type="data" format="json"
37 label="File of data of wine whose quality to be predicted (.json)"/>
38 <param name="model_ckpt" optional="false" type="data" format="ckpt"
39 label="model_ckpt model file (.ckpt)"/>
40 <param name="norm_config_json" optional="false" type="data" format="json"
41 label="norm_config normalization configuration (.json)"/>
42 </inputs>
43
44 <outputs>
45 <data format="json" name="report_json" label="report (.json)"/>
46 </outputs>
47
48 <tests>
49 </tests>
50
51 <help><![CDATA[
52
53 wine_quality_predict.xml
54
55 ===========================
56
57 Code:
58
59 ----
60
61 - wine_quality_predict.py
62
63 Inputs:
64
65 -------
66
67 - data file (.json) :
68 File containing data of wine for which quality is going to be predicted.
69
70 - Model file (.ckpt)
71
72 - Normalization configuration file (.json)
73
74 Outputs:
75
76 --------
77
78 - Report file (.json)
79
80 Credits:
81
82 --------
83
84 - Author: Nathalie Rousse nathalie.rousse@inrae.fr
85 - Copyright: INRAE
86
87 ]]>
88 </help>
89
90 </tool>