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comparison wine_quality_predict.xml @ 5:5024511f841e draft default tip

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit 293e7a2e4cc40479ce83dca0168d17b314f9b607
author siwaa
date Mon, 09 Dec 2024 11:26:23 +0000
parents e88a46bee6e5
children
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4:e88a46bee6e5 5:5024511f841e
15 <command detect_errors="aggressive"> 15 <command detect_errors="aggressive">
16 <![CDATA[ 16 <![CDATA[
17 bash -e -c "source /fidle-tp/fidle-env/bin/activate && 17 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
18 mkdir datasets-fidle && 18 mkdir datasets-fidle &&
19 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) && 19 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
20 mkdir cache_dir &&
21 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
22 mkdir mpl_dir &&
23 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
20 python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} && 24 python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} &&
21 cp OUTPUTS/report.json ${report_json}" 25 cp OUTPUTS/report.json ${report_json}"
22 ]]> 26 ]]>
23 </command> 27 </command>
24 28