Mercurial > repos > siwaa > wine_quality_predict
diff wine_quality_predict.xml @ 2:4d31508e95c6 draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit 58f66f614dc32b7550ac23e52d84248ddc802863-dirty
author | siwaa |
---|---|
date | Fri, 06 Dec 2024 19:17:19 +0000 |
parents | f9637dc4e18a |
children | 01bf4f689614 |
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--- a/wine_quality_predict.xml Wed Dec 04 18:35:11 2024 +0000 +++ b/wine_quality_predict.xml Fri Dec 06 19:17:19 2024 +0000 @@ -17,11 +17,19 @@ </environment_variables> <command detect_errors="aggressive"> <![CDATA[ - . /fidle-tp/fidle-env/bin/activate; - mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir; - mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir; - /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json}"; - cp OUTPUTS/report.json ${report_json}; + + bash -e -c "source /fidle-tp/fidle-env/bin/activate && + mkdir datasets-fidle && + export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) && + mkdir ipython_dir && + export IPYTHONDIR=\$(realpath -s ipython_dir) && + ipython profile create default && + mkdir cache_dir && + export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) && + mkdir mpl_dir && + export MPLCONFIGDIR=\$(realpath -s mpl_dir) && + python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} && + cp OUTPUTS/report.json ${report_json}" ]]> </command>