Mercurial > repos > siwaa > wine_quality_predict
diff wine_quality_predict.xml.original @ 2:4d31508e95c6 draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit 58f66f614dc32b7550ac23e52d84248ddc802863-dirty
author | siwaa |
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date | Fri, 06 Dec 2024 19:17:19 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/wine_quality_predict.xml.original Fri Dec 06 19:17:19 2024 +0000 @@ -0,0 +1,83 @@ +<tool id="wine_quality_predict" name="wine_quality_predict" version="1.0.0"> + + <description>wine_quality_predict</description> + + <requirements> + + <!-- singularity --> + <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container> + + <!-- image locale + <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> + + </requirements> + + <environment_variables> + <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable> + </environment_variables> + <command detect_errors="aggressive"> + <![CDATA[ + . /fidle-tp/fidle-env/bin/activate; + mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir; + mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir; + /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json}"; + cp OUTPUTS/report.json ${report_json}; + ]]> + </command> + + <inputs> + <param name="data_json" optional="false" type="data" format="json" + label="File of data of wine whose quality to be predicted (.json)"/> + <param name="model_ckpt" optional="false" type="data" format="ckpt" + label="model_ckpt model file (.ckpt)"/> + <param name="norm_config_json" optional="false" type="data" format="json" + label="norm_config normalization configuration (.json)"/> + </inputs> + + <outputs> + <data format="json" name="report_json" label="report (.json)"/> + </outputs> + + <tests> + </tests> + + <help><![CDATA[ + +wine_quality_predict.xml + +=========================== + +Code: + +---- + +- wine_quality_predict.py + +Inputs: + +------- + +- data file (.json) : + File containing data of wine for which quality is going to be predicted. + +- Model file (.ckpt) + +- Normalization configuration file (.json) + +Outputs: + +-------- + +- Report file (.json) + +Credits: + +-------- + +- Author: Nathalie Rousse nathalie.rousse@inrae.fr +- Copyright: INRAE + + ]]> + </help> + +</tool>