# HG changeset patch
# User siwaa
# Date 1733741635 0
# Node ID e88a46bee6e5e2cc923c63fafe98ea86e0bf0a5d
# Parent  01bf4f689614cebf2f0441ea030dd193179ccf3e
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty

diff -r 01bf4f689614 -r e88a46bee6e5 wine_quality_predict.xml
--- a/wine_quality_predict.xml	Fri Dec 06 19:19:30 2024 +0000
+++ b/wine_quality_predict.xml	Mon Dec 09 10:53:55 2024 +0000
@@ -5,28 +5,18 @@
   <requirements>
 
     <!-- singularity -->
-    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container>
 
     <!-- image locale
     <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
 
   </requirements>
 
-  <environment_variables>
-  </environment_variables>
   <command detect_errors="aggressive">
     <![CDATA[
-
     bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
     mkdir datasets-fidle &&
     export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
-    mkdir ipython_dir &&
-    export IPYTHONDIR=\$(realpath -s ipython_dir) &&
-    ipython profile create default &&
-    mkdir cache_dir &&
-    export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
-    mkdir mpl_dir &&
-    export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
     python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} &&
     cp OUTPUTS/report.json ${report_json}"
     ]]>
diff -r 01bf4f689614 -r e88a46bee6e5 wine_quality_predict.xml.VENDREDI
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/wine_quality_predict.xml.VENDREDI	Mon Dec 09 10:53:55 2024 +0000
@@ -0,0 +1,90 @@
+<tool id="wine_quality_predict" name="wine_quality_predict" version="1.0.0">
+
+  <description>wine_quality_predict</description>
+
+  <requirements>
+
+    <!-- singularity -->
+    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container>
+
+    <!-- image locale
+    <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
+
+  </requirements>
+
+  <environment_variables>
+  </environment_variables>
+  <command detect_errors="aggressive">
+    <![CDATA[
+
+    bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
+    mkdir datasets-fidle &&
+    export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
+    mkdir ipython_dir &&
+    export IPYTHONDIR=\$(realpath -s ipython_dir) &&
+    ipython profile create default &&
+    mkdir cache_dir &&
+    export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
+    mkdir mpl_dir &&
+    export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
+    python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} &&
+    cp OUTPUTS/report.json ${report_json}"
+    ]]>
+  </command>
+
+  <inputs>
+    <param name="data_json" optional="false" type="data" format="json"
+           label="File of data of wine whose quality to be predicted (.json)"/>
+    <param name="model_ckpt" optional="false" type="data" format="ckpt" 
+           label="model_ckpt model file (.ckpt)"/>
+    <param name="norm_config_json" optional="false" type="data" format="json" 
+           label="norm_config normalization configuration (.json)"/>
+  </inputs>
+
+  <outputs>
+    <data format="json" name="report_json" label="report (.json)"/>
+  </outputs>
+
+  <tests>
+  </tests>
+
+  <help><![CDATA[
+
+wine_quality_predict.xml
+
+===========================
+
+Code:
+
+----
+
+- wine_quality_predict.py
+
+Inputs:
+
+-------
+
+- data file (.json) :
+  File containing data of wine for which quality is going to be predicted.
+
+- Model file (.ckpt)
+
+- Normalization configuration file (.json)
+
+Outputs:
+
+--------
+
+- Report file (.json)
+
+Credits:
+
+--------
+
+-  Author: Nathalie Rousse nathalie.rousse@inrae.fr
+-  Copyright: INRAE
+
+  ]]>
+  </help>
+
+</tool>