Mercurial > repos > siwaa > wine_quality_train_eval

comparison wine_quality_train_eval.xml.essai @ 1:1275edb76345 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc
author siwaa
date Wed, 04 Dec 2024 18:34:56 +0000
parents
children
comparison
equal deleted inserted replaced
0:202391eebeb6 1:1275edb76345
1 <tool id="wine_quality_train_eval" name="wine_quality_train_eval"
2 version="1.0.0">
3
4 <description>wine_quality_train_eval</description>
5
6 <requirements>
7
8 <!-- singularity -->
9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container>
10
11 <!-- image locale
12 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
13
14 </requirements>
15
16 <environment_variables>
17 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
18 </environment_variables>
19 <command detect_errors="aggressive">
20 <![CDATA[
21 . /fidle-tp/fidle-env/bin/activate;
22 /bin/bash -c "mkdir ./cache_dir; export TRANSFORMERS_CACHE=./cache_dir";
23 /bin/bash -c "mkdir ./mpl_dir; export MPLCONFIGDIR=./mpl_dir";
24 /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv}";
25 cp OUTPUTS/model.ckpt ${model_ckpt};
26 cp OUTPUTS/norm_config.json ${norm_config_json};
27 cp OUTPUTS/report.json ${report_json};
28 ]]>
29 </command>
30
31 <inputs>
32 <param name="dataset_csv" optional="true" type="data" format="csv"
33 label="File of dataset used to train and test the model (.csv)"/>
34 </inputs>
35
36 <outputs>
37 <data format="ckpt" name="model_ckpt"
38 label="model_ckpt model file (.ckpt)"/>
39 <data format="json" name="norm_config_json"
40 label="norm_config normalization configuration (.json)"/>
41 <data format="json" name="report_json" label="report (.json)"/>
42 </outputs>
43
44 <tests>
45 </tests>
46
47 <help><![CDATA[
48
49 wine_quality_train_eval.xml
50
51 ===========================
52
53 Code:
54
55 ----
56
57 - wine_quality_train_eval.py
58
59 Inputs:
60
61 -------
62
63 - dataset file (.csv) :
64
65 File containing dataset used to train and test the model.
66
67 The dataset will be splitted in 2 parts (training part, validation part).
68
69 If not given, an embedded default file used.
70
71 Outputs:
72
73 --------
74
75 - Model file (.ckpt)
76
77 - Normalization configuration file (.json)
78
79 - Report file (.json)
80
81 Credits:
82
83 --------
84
85 - Author: Nathalie Rousse nathalie.rousse@inrae.fr
86 - Copyright: INRAE
87
88 ]]>
89 </help>
90
91 </tool>