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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc
author siwaa
date Wed, 04 Dec 2024 15:24:43 +0000
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1 <tool id="wine_quality_train_eval" name="wine_quality_train_eval"
2 version="1.0.0">
3
4 <description>wine_quality_train_eval</description>
5
6 <requirements>
7
8 <!-- singularity -->
9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container>
10
11 <!-- image locale
12 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
13
14 </requirements>
15
16 <environment_variables>
17 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
18 </environment_variables>
19 <command detect_errors="aggressive">
20 <![CDATA[
21 . /fidle-tp/fidle-env/bin/activate;
22 /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv}";
23 cp OUTPUTS/model.ckpt ${model_ckpt};
24 cp OUTPUTS/norm_config.json ${norm_config_json};
25 cp OUTPUTS/report.json ${report_json};
26 ]]>
27 </command>
28
29 <inputs>
30 <param name="dataset_csv" optional="true" type="data" format="csv"
31 label="File of dataset used to train and test the model (.csv)"/>
32 </inputs>
33
34 <outputs>
35 <data format="ckpt" name="model_ckpt"
36 label="model_ckpt model file (.ckpt)"/>
37 <data format="json" name="norm_config_json"
38 label="norm_config normalization configuration (.json)"/>
39 <data format="json" name="report_json" label="report (.json)"/>
40 </outputs>
41
42 <tests>
43 </tests>
44
45 <help><![CDATA[
46
47 wine_quality_train_eval.xml
48
49 ===========================
50
51 Code:
52
53 ----
54
55 - wine_quality_train_eval.py
56
57 Inputs:
58
59 -------
60
61 - dataset file (.csv) :
62
63 File containing dataset used to train and test the model.
64
65 The dataset will be splitted in 2 parts (training part, validation part).
66
67 If not given, an embedded default file used.
68
69 Outputs:
70
71 --------
72
73 - Model file (.ckpt)
74
75 - Normalization configuration file (.json)
76
77 - Report file (.json)
78
79 Credits:
80
81 --------
82
83 - Author: Nathalie Rousse nathalie.rousse@inrae.fr
84 - Copyright: INRAE
85
86 ]]>
87 </help>
88
89 </tool>