Mercurial > repos > siwaa > wine_quality_train_eval

comparison wine_quality_train_eval.xml @ 7:92c6d97ef171 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7fd13c34ec074a7ebc246301b5a80069dcbcc3a-dirty
author siwaa
date Thu, 05 Dec 2024 14:23:47 +0000
parents 51f36952ccaa
children 7ee93e4cf2da
comparison
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6:51f36952ccaa 7:92c6d97ef171
4 <description>wine_quality_train_eval</description> 4 <description>wine_quality_train_eval</description>
5 5
6 <requirements> 6 <requirements>
7 7
8 <!-- singularity --> 8 <!-- singularity -->
9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container> 9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:e7fd13c34ec074a7ebc246301b5a80069dcbcc3a</container>
10 10
11 <!-- image locale 11 <!-- image locale
12 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> 12 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
13 13
14 </requirements> 14 </requirements>
21 bash -e -c "source /fidle-tp/fidle-env/bin/activate && 21 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
22 mkdir cache_dir && 22 mkdir cache_dir &&
23 mkdir mpl_dir && 23 mkdir mpl_dir &&
24 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) && 24 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
25 export MPLCONFIGDIR=\$(realpath -s mpl_dir) && 25 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
26 cp /fidlemore/model_wine_lightning/wine_quality_train_eval.py wine_quality_train_eval.py && 26 python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
27 python3 wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
28 cp OUTPUTS/model.ckpt ${model_ckpt} && 27 cp OUTPUTS/model.ckpt ${model_ckpt} &&
29 cp OUTPUTS/norm_config.json ${norm_config_json} && 28 cp OUTPUTS/norm_config.json ${norm_config_json} &&
30 cp OUTPUTS/report.json ${report_json}" 29 cp OUTPUTS/report.json ${report_json}"
31 ]]> 30 ]]>
32 </command> 31 </command>