Mercurial > repos > siwaa > wine_quality_train_eval

comparison wine_quality_train_eval.xml @ 16:dd7d99707a65 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit 58f66f614dc32b7550ac23e52d84248ddc802863-dirty
author siwaa
date Fri, 06 Dec 2024 18:33:53 +0000
parents c1d9515c9434
children e233f68fc8c6
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15:c1d9515c9434 16:dd7d99707a65
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4 <description>wine_quality_train_eval</description> 4 <description>wine_quality_train_eval</description>
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6 <requirements> 6 <requirements>
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8 <!-- singularity A REMETTRE (avant essais) 8 <!-- singularity -->
9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container --> 9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container>
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14 <!-- singularity ESSAIS -->
15 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:ea8ac4fa4f127a69480c70e8966353df331d26ed</container>
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20 <!-- image locale 11 <!-- image locale
21 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> 12 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
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23 </requirements> 14 </requirements>
27 </environment_variables> 18 </environment_variables>
28 <command detect_errors="aggressive"> 19 <command detect_errors="aggressive">
29 <![CDATA[ 20 <![CDATA[
30 bash -e -c "source /fidle-tp/fidle-env/bin/activate && 21 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
31 export FIDLE_DATASETS_DIR=/fidle-tp/datasets-fidle && 22 export FIDLE_DATASETS_DIR=/fidle-tp/datasets-fidle &&
23 mkdir ipython_dir &&
32 export IPYTHONDIR=\$(realpath -s ipython_dir) && 24 export IPYTHONDIR=\$(realpath -s ipython_dir) &&
25 ipython profile create default &&
33 mkdir cache_dir && 26 mkdir cache_dir &&
34 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) && 27 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
35 mkdir mpl_dir && 28 mkdir mpl_dir &&
36 export MPLCONFIGDIR=\$(realpath -s mpl_dir) && 29 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
37 python3 $__tool_directory__/toto_wine_quality_train_eval.py -dataset_filepath ${dataset_csv} && 30 python3 $__tool_directory__/toto_wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&