# HG changeset patch
# User siwaa
# Date 1733393550 0
# Node ID d490c7a4c63bb9ed8ffbd97408a1bb5fd2c57d1b
# Parent  ce2d614cac6950cb0f0771007f601cc752bf699b
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty

diff -r ce2d614cac69 -r d490c7a4c63b wine_quality_train_eval.xml
--- a/wine_quality_train_eval.xml	Thu Dec 05 09:24:13 2024 +0000
+++ b/wine_quality_train_eval.xml	Thu Dec 05 10:12:30 2024 +0000
@@ -18,8 +18,8 @@
   </environment_variables>
   <command detect_errors="aggressive">
     <![CDATA[
-    . /fidle-tp/fidle-env/bin/activate;
-    bash -e -c "mkdir cache_dir &&
+    bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
+    mkdir cache_dir &&
     mkdir mpl_dir &&
     export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
     export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
diff -r ce2d614cac69 -r d490c7a4c63b wine_quality_train_eval.xml.essai
--- a/wine_quality_train_eval.xml.essai	Thu Dec 05 09:24:13 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,91 +0,0 @@
-<tool id="wine_quality_train_eval" name="wine_quality_train_eval"
- version="1.0.0">
-
-  <description>wine_quality_train_eval</description>
-
-  <requirements>
-
-    <!-- singularity -->
-    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container>
-
-    <!-- image locale
-    <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
-
-  </requirements>
-
-  <environment_variables>
-    <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
-  </environment_variables>
-  <command detect_errors="aggressive">
-    <![CDATA[
-    . /fidle-tp/fidle-env/bin/activate;
-    /bin/bash -c "mkdir ./cache_dir; export TRANSFORMERS_CACHE=./cache_dir";
-    /bin/bash -c "mkdir ./mpl_dir; export MPLCONFIGDIR=./mpl_dir";
-    /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv}";
-    cp OUTPUTS/model.ckpt ${model_ckpt};
-    cp OUTPUTS/norm_config.json ${norm_config_json};
-    cp OUTPUTS/report.json ${report_json};
-    ]]>
-  </command>
-
-  <inputs>
-    <param name="dataset_csv" optional="true" type="data" format="csv"
-           label="File of dataset used to train and test the model (.csv)"/>
-  </inputs>
-
-  <outputs>
-    <data format="ckpt" name="model_ckpt"
-          label="model_ckpt model file (.ckpt)"/>
-    <data format="json" name="norm_config_json"
-          label="norm_config normalization configuration (.json)"/>
-    <data format="json" name="report_json" label="report (.json)"/>
-  </outputs>
-
-  <tests>
-  </tests>
-
-  <help><![CDATA[
-
-wine_quality_train_eval.xml
-
-===========================
-
-Code:
-
-----
-
-- wine_quality_train_eval.py
-
-Inputs:
-
--------
-
-- dataset file (.csv) :
-
-  File containing dataset used to train and test the model.
-
-  The dataset will be splitted in 2 parts (training part, validation part).
-  
-  If not given, an embedded default file used.
-
-Outputs:
-
---------
-
-- Model file (.ckpt)
-
-- Normalization configuration file (.json)
-
-- Report file (.json)
-
-Credits:
-
---------
-
--  Author: Nathalie Rousse nathalie.rousse@inrae.fr
--  Copyright: INRAE
-
-  ]]>
-  </help>
-
-</tool>
diff -r ce2d614cac69 -r d490c7a4c63b wine_quality_train_eval.xml.essaiNOK
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/wine_quality_train_eval.xml.essaiNOK	Thu Dec 05 10:12:30 2024 +0000
@@ -0,0 +1,93 @@
+<tool id="wine_quality_train_eval" name="wine_quality_train_eval"
+ version="1.0.0">
+
+  <description>wine_quality_train_eval</description>
+
+  <requirements>
+
+    <!-- singularity -->
+    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container>
+
+    <!-- image locale
+    <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
+
+  </requirements>
+
+  <environment_variables>
+    <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
+  </environment_variables>
+  <command detect_errors="aggressive">
+    <![CDATA[
+    . /fidle-tp/fidle-env/bin/activate;
+    bash -e -c "mkdir cache_dir &&
+    mkdir mpl_dir &&
+    export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
+    export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
+    python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
+    cp OUTPUTS/model.ckpt ${model_ckpt} &&
+    cp OUTPUTS/norm_config.json ${norm_config_json} &&
+    cp OUTPUTS/report.json ${report_json}"
+    ]]>
+  </command>
+
+  <inputs>
+    <param name="dataset_csv" optional="true" type="data" format="csv"
+           label="File of dataset used to train and test the model (.csv)"/>
+  </inputs>
+
+  <outputs>
+    <data format="ckpt" name="model_ckpt"
+          label="model_ckpt model file (.ckpt)"/>
+    <data format="json" name="norm_config_json"
+          label="norm_config normalization configuration (.json)"/>
+    <data format="json" name="report_json" label="report (.json)"/>
+  </outputs>
+
+  <tests>
+  </tests>
+
+  <help><![CDATA[
+
+wine_quality_train_eval.xml
+
+===========================
+
+Code:
+
+----
+
+- wine_quality_train_eval.py
+
+Inputs:
+
+-------
+
+- dataset file (.csv) :
+
+  File containing dataset used to train and test the model.
+
+  The dataset will be splitted in 2 parts (training part, validation part).
+  
+  If not given, an embedded default file used.
+
+Outputs:
+
+--------
+
+- Model file (.ckpt)
+
+- Normalization configuration file (.json)
+
+- Report file (.json)
+
+Credits:
+
+--------
+
+-  Author: Nathalie Rousse nathalie.rousse@inrae.fr
+-  Copyright: INRAE
+
+  ]]>
+  </help>
+
+</tool>