Mercurial > repos > siwaa > wine_quality_train_eval
changeset 0:202391eebeb6 draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc
author | siwaa |
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date | Wed, 04 Dec 2024 15:24:43 +0000 |
parents | |
children | 1275edb76345 |
files | wine_quality_train_eval.xml |
diffstat | 1 files changed, 89 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/wine_quality_train_eval.xml Wed Dec 04 15:24:43 2024 +0000 @@ -0,0 +1,89 @@ +<tool id="wine_quality_train_eval" name="wine_quality_train_eval" + version="1.0.0"> + + <description>wine_quality_train_eval</description> + + <requirements> + + <!-- singularity --> + <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container> + + <!-- image locale + <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> + + </requirements> + + <environment_variables> + <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable> + </environment_variables> + <command detect_errors="aggressive"> + <![CDATA[ + . /fidle-tp/fidle-env/bin/activate; + /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv}"; + cp OUTPUTS/model.ckpt ${model_ckpt}; + cp OUTPUTS/norm_config.json ${norm_config_json}; + cp OUTPUTS/report.json ${report_json}; + ]]> + </command> + + <inputs> + <param name="dataset_csv" optional="true" type="data" format="csv" + label="File of dataset used to train and test the model (.csv)"/> + </inputs> + + <outputs> + <data format="ckpt" name="model_ckpt" + label="model_ckpt model file (.ckpt)"/> + <data format="json" name="norm_config_json" + label="norm_config normalization configuration (.json)"/> + <data format="json" name="report_json" label="report (.json)"/> + </outputs> + + <tests> + </tests> + + <help><![CDATA[ + +wine_quality_train_eval.xml + +=========================== + +Code: + +---- + +- wine_quality_train_eval.py + +Inputs: + +------- + +- dataset file (.csv) : + + File containing dataset used to train and test the model. + + The dataset will be splitted in 2 parts (training part, validation part). + + If not given, an embedded default file used. + +Outputs: + +-------- + +- Model file (.ckpt) + +- Normalization configuration file (.json) + +- Report file (.json) + +Credits: + +-------- + +- Author: Nathalie Rousse nathalie.rousse@inrae.fr +- Copyright: INRAE + + ]]> + </help> + +</tool>