Mercurial > repos > patrick_chabrier > carboseq_s

comparison carboseqSimulator.xml @ 4:b5a6c2d3e5e7 draft

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author siwaa
date Tue, 25 Jun 2024 15:44:17 +0000
parents 40f76111ab6c
children 4c1a7c22e770
comparison
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3:40f76111ab6c 4:b5a6c2d3e5e7
8 mkdir output && 8 mkdir output &&
9 unzip -d input ${input} && 9 unzip -d input ${input} &&
10 set -a ;source /usr/local/src/myscripts/.env && 10 set -a ;source /usr/local/src/myscripts/.env &&
11 mkdir tmp && 11 mkdir tmp &&
12 export TMP=\$(realpath -s tmp) && 12 export TMP=\$(realpath -s tmp) &&
13 pwd &&
14 ls &&
13 Rscript /usr/local/src/myscripts/scenarios/run-sim-perf/run.r --url=https://coby.infosol.inrae.fr:7777/semantify --srcDir=\$(realpath -s input) --srcOut=\$(realpath -s output) --NBCores=\${GALAXY_SLOTS:-4}&& 15 Rscript /usr/local/src/myscripts/scenarios/run-sim-perf/run.r --url=https://coby.infosol.inrae.fr:7777/semantify --srcDir=\$(realpath -s input) --srcOut=\$(realpath -s output) --NBCores=\${GALAXY_SLOTS:-4}&&
14 mv output/* ${output}" 16 mv output/* ${output}"
15 ]]> 17 ]]>
16 </command> 18 </command>
17 <inputs> 19 <inputs>