Mercurial > repos > siwaa > azodyn

comparison tool_AZODYN.xml @ 1:97f5c404a9d6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 8269762f9e0aad13dad21b646add6fed821ed613"
author siwaa
date Wed, 17 Nov 2021 14:00:22 +0000
parents 7a2bd77a30bf
children e6bbaf03133e
comparison
equal deleted inserted replaced
0:7a2bd77a30bf 1:97f5c404a9d6
1 <tool id="AZODYN" name="AZODYN crop models simulations" version="1.0.0"> 1 <tool id="AZODYN" name="AZODYN crop models simulations" version="1.0.0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:358a6e682f76859d7b54f359b1ab701b79e3791e</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:latest</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 unzip ${input_meteo}; 7 unzip ${input_meteo};
8 /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R ${crop_type} AZODYN ${file_input} ${file_outputs} 5"; 8 /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R ${crop_type} AZODYN ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
9 zip temp_results.zip simresults_*.txt; 9 zip temp_results.zip simresults_*.txt;
10 cp temp_results.zip ${simresults}; 10 cp temp_results.zip ${simresults};
11 </command> 11 </command>
12 <inputs> 12 <inputs>
13 <param name="crop_type" type="select" label="Select crop to simulate"> 13 <param name="crop_type" type="select" label="Select crop to simulate">