Mercurial > repos > siwaa > azodyn

diff tool_AZODYN.xml @ 1:97f5c404a9d6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 8269762f9e0aad13dad21b646add6fed821ed613"
author siwaa
date Wed, 17 Nov 2021 14:00:22 +0000
parents 7a2bd77a30bf
children e6bbaf03133e
line wrap: on
line diff
--- a/tool_AZODYN.xml	Tue Oct 26 09:07:12 2021 +0000
+++ b/tool_AZODYN.xml	Wed Nov 17 14:00:22 2021 +0000
@@ -1,11 +1,11 @@
 <tool id="AZODYN" name="AZODYN crop models simulations" version="1.0.0">
   <description></description>
   <requirements>
-    <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:358a6e682f76859d7b54f359b1ab701b79e3791e</container>
+    <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:latest</container>
   </requirements>
   <command detect_errors="aggressive">
     unzip ${input_meteo}; 
-    /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R ${crop_type} AZODYN ${file_input} ${file_outputs} 5";
+    /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R ${crop_type} AZODYN ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
     zip temp_results.zip  simresults_*.txt;
     cp temp_results.zip ${simresults};
   </command>