Mercurial > repos > siwaa > azodyn

comparison tool_defaults_AZODYN.xml @ 9:ead8d0406cdb draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/c9b430e4970fce7c1f410a1aa201e3434aa0ec05 commit c9b430e4970fce7c1f410a1aa201e3434aa0ec05-dirty"
author siwaa
date Wed, 10 Jan 2024 10:31:43 +0000
parents b72b6d36bf94
children 34f022d90021
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8:b72b6d36bf94 9:ead8d0406cdb
1 <tool id="AZODYNdefaults" name="AZODYN crop models default inputs and outputs" version="1.3.0"> 1 <tool id="AZODYNdefaults" name="AZODYN crop models default inputs and outputs" version="1.4.0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.3</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.4</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R ${crop_type} AZODYN"; 7 /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R ${crop_type} AZODYN";
8 cp file_default_input.csv ${inputs}; 8 cp file_default_input.csv ${inputs};
9 cp file_default_output.csv ${outputs}; 9 cp file_default_output.csv ${outputs};
11 <inputs> 11 <inputs>
12 <param name="crop_type" type="select" label="Select crop"> 12 <param name="crop_type" type="select" label="Select crop">
13 <option value="AzodynPea.vpz">Pea</option> 13 <option value="AzodynPea.vpz">Pea</option>
14 <option value="AzodynWheat.vpz">Wheat</option> 14 <option value="AzodynWheat.vpz">Wheat</option>
15 <option value="AzodynBarley.vpz">Barley</option> 15 <option value="AzodynBarley.vpz">Barley</option>
16 <option value="AzodynColza.vpz">Rapeseed</option>
16 </param> 17 </param>
17 </inputs> 18 </inputs>
18 <outputs> 19 <outputs>
19 <data format="csv" name="inputs" label="Azodyn default inputs"/> 20 <data format="csv" name="inputs" label="Azodyn default inputs"/>
20 <data format="csv" name="outputs" label="Azodyn default outputs"/> 21 <data format="csv" name="outputs" label="Azodyn default outputs"/>