Mercurial > repos > siwaa > azodyn

annotate tool_defaults_AZODYN.xml @ 9:ead8d0406cdb draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/c9b430e4970fce7c1f410a1aa201e3434aa0ec05 commit c9b430e4970fce7c1f410a1aa201e3434aa0ec05-dirty"
author siwaa
date Wed, 10 Jan 2024 10:31:43 +0000
parents b72b6d36bf94
children 34f022d90021
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9
ead8d0406cdb "planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/c9b430e4970fce7c1f410a1aa201e3434aa0ec05 commit c9b430e4970fce7c1f410a1aa201e3434aa0ec05-dirty"
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1 <tool id="AZODYNdefaults" name="AZODYN crop models default inputs and outputs" version="1.4.0">
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2 <description></description>
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3 <requirements>
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4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.4</container>
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5 </requirements>
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6 <command detect_errors="aggressive">
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7 /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R ${crop_type} AZODYN";
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8 cp file_default_input.csv ${inputs};
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9 cp file_default_output.csv ${outputs};
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10 </command>
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11 <inputs>
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12 <param name="crop_type" type="select" label="Select crop">
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13 <option value="AzodynPea.vpz">Pea</option>
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14 <option value="AzodynWheat.vpz">Wheat</option>
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15 <option value="AzodynBarley.vpz">Barley</option>
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16 <option value="AzodynColza.vpz">Rapeseed</option>
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17 </param>
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18 </inputs>
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19 <outputs>
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20 <data format="csv" name="inputs" label="Azodyn default inputs"/>
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21 <data format="csv" name="outputs" label="Azodyn default outputs"/>
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22 </outputs>
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23 <tests>
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24 <test>
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25 <param name="crop_type" value="AzodynPea.vpz" />
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26 <output name="inputs">
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27 <assert_contents>
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28 <has_text text="simulation_engine.duration;simulation_engine.begin" />
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29 <has_text text="Breteniere_1991_2018.csv;AZODYN" />
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30 </assert_contents>
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31 </output>
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32 <output name="outputs">
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33 <assert_contents>
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34 <has_text text="id;path;integration" />
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35 <has_text text="Des_cumul;view/AzodynPea:Frost.Des_cumul;all" />
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36 </assert_contents>
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37 </output>
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38 </test>
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39 </tests>
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40 <help><![CDATA[
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41 Azodyn crop models default inputs and outputs provider
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43 Full documentation is available here : https://siwaa.toulouse.inrae.fr/ in section "Tool Tuto > Azodyn tool"
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44 ]]>
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45 </help>
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46 </tool>
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