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annotate getdata.xml @ 2:fbf27235efbb draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit f2d89c9df8c4af6e4510181b76133420a22a805c-dirty"
author siwaa
date Tue, 12 Apr 2022 11:12:50 +0000
parents 305f3408f763
children a838ff8a6b02
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dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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1 <tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0">
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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2 <description>To retrieve the data from the soil db</description>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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3 <requirements>
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fbf27235efbb "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit f2d89c9df8c4af6e4510181b76133420a22a805c-dirty"
siwaa
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4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial:f2d89c9df8c4af6e4510181b76133420a22a805c</container>
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dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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5 </requirements>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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6 <command detect_errors="exit_code"><![CDATA[
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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7 bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}"
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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8 ]]>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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9 </command>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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10 <outputs>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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11 <data format='rdata' name="simulation_data" label="CarboSeq simulations data"/>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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12 </outputs>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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13 <tests>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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14 <test>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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15 <output name="simulation_data">
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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16 <assert_contents>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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17 <has_size value="216929" delta="100" />
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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18 </assert_contents>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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19 </output>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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20 </test>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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21 </tests>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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22 <help>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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23 the CarboSeqGetData tool
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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24 ========================
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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25
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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26 credits
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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27 -------
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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28
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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29 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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30 - Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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31 - Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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32 - Copyright: INRAE
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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33 </help>
dbf5f81e2ed6 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
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34 </tool>