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comparison getdata.xml.bak @ 1:305f3408f763 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit b4a42843af9004c7a847bfa7b5db18da0d2165bb-dirty"
author siwaa
date Wed, 06 Apr 2022 10:43:05 +0000
parents dbf5f81e2ed6
children
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0:dbf5f81e2ed6 1:305f3408f763
1 <tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0"> 1 <tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0">
2 <description>To retrieve the data from the soil db</description> 2 <description>To retrieve the data from the soil db</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial:latest</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}" 7 bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}"
8 ]]> 8 ]]>
9 </command> 9 </command>