Mercurial > repos > siwaa > carboseq_s

annotate carboseqUnsplit.R @ 16:5ed871d666b4 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/be8c2ab794a3722ee6edc3c9f7e73ccc45806f31/toos/CarboSeqSimulator commit be8c2ab794a3722ee6edc3c9f7e73ccc45806f31-dirty"
author siwaa
date Thu, 12 Dec 2024 14:38:52 +0000
parents 2af4b1e46d90
children
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2af4b1e46d90 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
siwaa
parents: 8
diff changeset
1 library(data.table)
2af4b1e46d90 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
siwaa
parents: 8
diff changeset
2 library(dplyr)
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
diff changeset
3
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2af4b1e46d90 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
siwaa
parents: 8
diff changeset
4 resU <- data.table();
5
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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5
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2af4b1e46d90 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
siwaa
parents: 8
diff changeset
6 listFiles <- commandArgs(trailingOnly = TRUE)
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
diff changeset
7
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2af4b1e46d90 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
siwaa
parents: 8
diff changeset
8 for (i in listFiles) {
2af4b1e46d90 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
siwaa
parents: 8
diff changeset
9 load(i)
2af4b1e46d90 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
siwaa
parents: 8
diff changeset
10 resU<- dplyr::bind_rows(resU, res);
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3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
11 rm(res)
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
12 }
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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13
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
14 res <-resU
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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15
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
diff changeset
16 save(res, file = 'csopraRes.Rdata')