Mercurial > repos > siwaa > carboseq_s

annotate carboseqUnsplit.R @ 8:5fdc9d0c223b draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
author siwaa
date Fri, 30 Aug 2024 13:29:48 +0000
parents 3e7978af2ba2
children 2af4b1e46d90
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3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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2 resU <- data.frame()
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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4 listFiles <- list.files('./inputs')
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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6 # restoring the order first
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
diff changeset
8 orderVec <- c()
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3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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10 for (i in list.files('./inputs')) {
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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11 load(file.path('.', 'inputs',i))
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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12 orderVec <- c(orderVec, res$ID[1]);
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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13 rm(res)
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
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14 }
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
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16 listFilesReOrder <- listFiles[order(orderVec)]
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
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18 for (i in listFilesReOrder) {
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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19 load(file.path('.', 'inputs',i))
5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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20 resU<- rbind(resU, res);
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3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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21 rm(res)
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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22 }
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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24 res <-resU
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
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5fdc9d0c223b "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/43e7f4ebfe4e552bf684936df0a050cb6def5aab/toos/CarboSeqSimulator commit 43e7f4ebfe4e552bf684936df0a050cb6def5aab-dirty"
siwaa
parents: 5
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26 save(res, file = 'csopraRes.Rdata')