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comparison carboseqUnsplit.xml @ 9:2af4b1e46d90 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
author siwaa
date Tue, 17 Sep 2024 10:41:39 +0000
parents 5fdc9d0c223b
children
comparison
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8:5fdc9d0c223b 9:2af4b1e46d90
1 <tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.3"> 1 <tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.4">
2 <description>To unsplit CarboSeq results</description> 2 <description>To unsplit CarboSeq results</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:siwa</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/carboseq_r_4_siwaa</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 mkdir inputs && 7 Rscript $__tool_directory__/carboseqUnsplit.R #for $input in $inputList# $input #end for# &&
8 #for $input in $inputList
9 cp $input inputs &&
10 #end for
11 Rscript $__tool_directory__/carboseqUnsplit.R &&
12 cp csopraRes.Rdata $output 8 cp csopraRes.Rdata $output
13 ]]> 9 ]]>
14 </command> 10 </command>
15 <inputs> 11 <inputs>
16 <param name="inputList" type="data_collection" collection_type="list" label="CarboSeq results list (zip of .rdata)"/> 12 <param name="inputList" type="data_collection" collection_type="list" label="CarboSeq results list (zip of .rdata)"/>