Mercurial > repos > siwaa > carboseq_s

diff carboseqUnsplit.xml @ 9:2af4b1e46d90 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
author siwaa
date Tue, 17 Sep 2024 10:41:39 +0000
parents 5fdc9d0c223b
children
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--- a/carboseqUnsplit.xml	Fri Aug 30 13:29:48 2024 +0000
+++ b/carboseqUnsplit.xml	Tue Sep 17 10:41:39 2024 +0000
@@ -1,14 +1,10 @@
-<tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.3">
+<tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.4">
   <description>To unsplit CarboSeq results</description>
   <requirements>
-    <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:siwa</container>
+    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/carboseq_r_4_siwaa</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
-  mkdir inputs &&
-  #for $input in $inputList
-  cp $input inputs &&
-  #end for
-  Rscript $__tool_directory__/carboseqUnsplit.R &&
+  Rscript $__tool_directory__/carboseqUnsplit.R #for $input in $inputList# $input #end for# &&
   cp csopraRes.Rdata $output
     ]]>
   </command>