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comparison carboseqUnsplit.xml @ 5:3e7978af2ba2 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
author siwaa
date Wed, 28 Aug 2024 14:53:30 +0000
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children 5fdc9d0c223b
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4:a069fc43b0b1 5:3e7978af2ba2
1 <tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.1">
2 <description>To unsplit CarboSeq results</description>
3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:siwa</container>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 mkdir inputs &&
8 #for $input in $inputList
9 cp $input inputs &&
10 #end for
11 Rscript $__tool_directory__/carboseqUnsplit.R &&
12 cp csopraRes.Rdata $output
13 ]]>
14 </command>
15 <inputs>
16 <param name="inputList" type="data_collection" collection_type="list" label="CarboSeq results list (zip of .rdata)"/>
17 </inputs>
18 <outputs>
19 <data format='rdata' name="output" label="CarboSeq output (rdata)"/>
20 </outputs>
21 <tests>
22 </tests>
23 <help>
24 the CarboSeq CarboseqSimulator tool
25 ===================================
26
27 credits
28 -------
29 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
30 - Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
31 - Copyright: INRAE
32 </help>
33 </tool>