Mercurial > repos > siwaa > carboseq_s

diff carboseqUnsplit.xml @ 5:3e7978af2ba2 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
author siwaa
date Wed, 28 Aug 2024 14:53:30 +0000
parents
children 5fdc9d0c223b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/carboseqUnsplit.xml	Wed Aug 28 14:53:30 2024 +0000
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+<tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.1">
+  <description>To unsplit CarboSeq results</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:siwa</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+  mkdir inputs &&
+  #for $input in $inputList
+  cp $input inputs &&
+  #end for
+  Rscript $__tool_directory__/carboseqUnsplit.R &&
+  cp csopraRes.Rdata $output
+    ]]>
+  </command>
+  <inputs>
+    <param name="inputList" type="data_collection" collection_type="list" label="CarboSeq results list (zip of .rdata)"/>
+  </inputs>
+  <outputs>
+    <data format='rdata' name="output" label="CarboSeq output (rdata)"/>
+  </outputs>
+<tests>
+</tests>
+<help>
+the CarboSeq CarboseqSimulator tool
+===================================
+
+credits
+-------
+-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
+-  Copyright: INRAE
+</help>
+</tool>