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comparison config_mappers/aial.json @ 3:d753f3430970 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/cc777c42662683b47bdcdcd72d65e0087962b794/toos/CarboSeqSimulator commit cc777c42662683b47bdcdcd72d65e0087962b794-dirty"
author siwaa
date Fri, 23 Aug 2024 10:09:37 +0000
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2:d78961e3f5ca 3:d753f3430970
1 [
2 {
3 "extFileName": "mat_rot_cult",
4 "appFiles": [
5 {
6 "appFileName": "matRotCults",
7 "columns": [
8 {
9 "extColumnName": "id_profil_csopra",
10 "appColumnName": "id_profil_csopra",
11 "urifyHeader": true
12 },
13 {
14 "extColumnName": "id_succession",
15 "appColumnName": "id_succession",
16 "urifyHeader": true
17 },
18 {
19 "extColumnName": "id_culture",
20 "appColumnName": "id_culture",
21 "urifyHeader": true
22 },
23 {
24 "extColumnName": "nom_culture",
25 "appColumnName": "nom_culture",
26 "urifyHeader": true
27 },
28 {
29 "extColumnName": "type_culture",
30 "appColumnName": "type_culture",
31 "urifyHeader": true
32 },
33 {
34 "extColumnName": "date_fin",
35 "appColumnName": "date_fin",
36 "urifyHeader": true
37 },
38 {
39 "extColumnName": "date_fin_text",
40 "appColumnName": "date_fin_text",
41 "urifyHeader": true
42 },
43 {
44 "extColumnName": "type_gestion_res",
45 "appColumnName": "type_gestion_res",
46 "urifyHeader": true
47 },
48 {
49 "extColumnName": "culture_intermediaire",
50 "appColumnName": "culture_intermediaire",
51 "urifyHeader": true
52 },
53 {
54 "extColumnName": "date_semis",
55 "appColumnName": "date_semis",
56 "urifyHeader": true
57 },
58 {
59 "extColumnName": "date_semis_text",
60 "appColumnName": "date_semis_text",
61 "urifyHeader": true
62 }
63 ]
64 }
65 ]
66 },
67 {
68 "extFileName": "mat_rot_fert_min",
69 "appFiles": [
70 {
71 "appFileName": "matRotFertMin",
72 "columns": [
73 {
74 "extColumnName": "id_profil_csopra",
75 "appColumnName": "id_profil_csopra",
76 "urifyHeader": true
77 },
78 {
79 "extColumnName": "id_succession",
80 "appColumnName": "id_succession",
81 "urifyHeader": true
82 },
83 {
84 "extColumnName": "id_ferti_min",
85 "appColumnName": "id_ferti_min",
86 "urifyHeader": true
87 },
88 {
89 "extColumnName": "date_ferti_min",
90 "appColumnName": "date_ferti_min",
91 "urifyHeader": true
92 },
93 {
94 "extColumnName": "dose_n",
95 "appColumnName": "dose_n",
96 "urifyHeader": true
97 },
98 {
99 "extColumnName": "dose_p",
100 "appColumnName": "dose_p",
101 "urifyHeader": true
102 }
103 ]
104 }
105 ]
106 },
107 {
108 "extFileName": "mat_rot_fert_org",
109 "appFiles": [
110 {
111 "appFileName": "matRotFertOrg",
112 "columns": [
113 {
114 "extColumnName": "id_profil_csopra",
115 "appColumnName": "id_profil_csopra",
116 "urifyHeader": true
117 },
118 {
119 "extColumnName": "id_succession",
120 "appColumnName": "id_succession",
121 "urifyHeader": true
122 },
123 {
124 "extColumnName": "id_ferti_org",
125 "appColumnName": "id_ferti_org",
126 "urifyHeader": true
127 },
128 {
129 "extColumnName": "type_ferti_org",
130 "appColumnName": "type_ferti_org",
131 "urifyHeader": true
132 },
133 {
134 "extColumnName": "date_ferti_org",
135 "appColumnName": "date_ferti_org",
136 "urifyHeader": true
137 },
138 {
139 "extColumnName": "masse_carb",
140 "appColumnName": "masse_carb",
141 "urifyHeader": true
142 },
143 {
144 "extColumnName": "fraction_lignine",
145 "appColumnName": "fraction_lignine",
146 "urifyHeader": true
147 },
148 {
149 "extColumnName": "ratio_c_n",
150 "appColumnName": "ratio_c_n",
151 "urifyHeader": true
152 },
153 {
154 "extColumnName": "ratio_c_p",
155 "appColumnName": "ratio_c_p",
156 "urifyHeader": true
157 },
158 {
159 "extColumnName": "ratio_c_s",
160 "appColumnName": "ratio_c_s",
161 "urifyHeader": true
162 }
163 ]
164 }
165 ]
166 },
167 {
168 "extFileName": "mat_rot_irrigation",
169 "appFiles": [
170 {
171 "appFileName": "matRotIrrigation",
172 "columns": [
173 {
174 "extColumnName": "id_profil_csopra",
175 "appColumnName": "id_profil_csopra",
176 "urifyHeader": true
177 },
178 {
179 "extColumnName": "id_succession",
180 "appColumnName": "id_succession",
181 "urifyHeader": true
182 },
183 {
184 "extColumnName": "id_irrigation",
185 "appColumnName": "id_irrigation",
186 "urifyHeader": true
187 },
188 {
189 "extColumnName": "date_irrig",
190 "appColumnName": "date_irrig",
191 "urifyHeader": true
192 },
193 {
194 "extColumnName": "dose_irrig",
195 "appColumnName": "dose_irrig",
196 "urifyHeader": true
197 }
198 ]
199 }
200 ]
201 },
202 {
203 "extFileName": "mat_rot_obs_cult",
204 "appFiles": [
205 {
206 "appFileName": "matRotObsCult",
207 "columns": [
208 {
209 "extColumnName": "id_profil_csopra",
210 "appColumnName": "id_profil_csopra",
211 "index": 0,
212 "urifyHeader": true
213 },
214 {
215 "extColumnName": "id_succession",
216 "appColumnName": "id_succession",
217 "index": 1,
218 "urifyHeader": true
219 },
220 {
221 "extColumnName": "id_culture",
222 "appColumnName": "id_culture",
223 "index": 2,
224 "urifyHeader": true
225 },
226 {
227 "extColumnName": "nom_culture",
228 "appColumnName": "nom_culture",
229 "index": 3,
230 "urifyHeader": true
231 },
232 {
233 "extColumnName": "type_culture",
234 "appColumnName": "type_culture",
235 "index": 4
236 },
237 {
238 "extColumnName": "num_ordre",
239 "appColumnName": "num_ordre",
240 "index": 6,
241 "urifyHeader": true
242 },
243 {
244 "extColumnName": "date_fin",
245 "appColumnName": "date_fin",
246 "index": 7,
247 "urifyHeader": true
248 },
249 {
250 "extColumnName": "date_fin_text",
251 "appColumnName": "date_fin_text",
252 "index": 8,
253 "urifyHeader": true
254 },
255 {
256 "extColumnName": "culture_intermediaire",
257 "appColumnName": "culture_intermediaire",
258 "index": 9,
259 "urifyHeader": true
260 },
261 {
262 "extColumnName": "rendement",
263 "appColumnName": "rendement",
264 "index": 10,
265 "urifyHeader": true
266 },
267 {
268 "extColumnName": "c_plante_aerien_c",
269 "appColumnName": "c_plante_aerien_c",
270 "index": 11,
271 "urifyHeader": true
272 },
273 {
274 "extColumnName": "c_plante_racine_c",
275 "appColumnName": "c_plante_racine_c",
276 "index": 12,
277 "urifyHeader": true
278 },
279 {
280 "extColumnName": "frac_of_stem_that_remains",
281 "appColumnName": "frac_of_stem_that_remains",
282 "index": 13,
283 "urifyHeader": true
284 },
285 {
286 "extColumnName": "flag_yield_remains",
287 "appColumnName": "flag_yield_remains",
288 "index": 14,
289 "urifyHeader": true
290 },
291 {
292 "extColumnName": "c_woody_elements",
293 "appColumnName": "c_woody_elements",
294 "index": 15,
295 "urifyHeader": true
296 }
297 ],
298 "additionalColumns": [
299 {
300 "columnName": "weather_data_id",
301 "columnValue": "",
302 "urifyHeader": true,
303 "index": 5
304 }
305 ]
306 }
307 ]
308 },
309 {
310 "extFileName": "mat_rot_trav_sol",
311 "appFiles": [
312 {
313 "appFileName": "matRotTravSol",
314 "columns": [
315 {
316 "extColumnName": "id_profil_csopra",
317 "appColumnName": "id_profil_csopra",
318 "urifyHeader": true
319 },
320 {
321 "extColumnName": "id_succession",
322 "appColumnName": "id_succession",
323 "urifyHeader": true
324 },
325 {
326 "extColumnName": "id_culture",
327 "appColumnName": "id_culture",
328 "urifyHeader": true
329 },
330 {
331 "extColumnName": "type_travsol",
332 "appColumnName": "type_travsol",
333 "urifyHeader": true
334 },
335 {
336 "extColumnName": "date_travsol",
337 "appColumnName": "date_travsol",
338 "urifyHeader": true
339 }
340 ]
341 }
342 ]
343 },
344 {
345 "extFileName": "usm_data",
346 "appFiles": [
347 {
348 "appFileName": "usmData",
349 "columns": [
350 {
351 "extColumnName": "id_profil_csopra",
352 "appColumnName": "id_profil_csopra",
353 "urifyHeader": true
354 },
355 {
356 "extColumnName": "no_horizon",
357 "appColumnName": "no_horizon",
358 "urifyHeader": true
359 },
360 {
361 "extColumnName": "prof_sup",
362 "appColumnName": "prof_sup",
363 "urifyHeader": true
364 },
365 {
366 "extColumnName": "prof_inf",
367 "appColumnName": "prof_inf",
368 "urifyHeader": true
369 },
370 {
371 "extColumnName": "clay",
372 "appColumnName": "clay",
373 "urifyHeader": true
374 },
375 {
376 "extColumnName": "sand",
377 "appColumnName": "sand",
378 "urifyHeader": true
379 },
380 {
381 "extColumnName": "silt",
382 "appColumnName": "silt",
383 "urifyHeader": true
384 },
385 {
386 "extColumnName": "bulkd",
387 "appColumnName": "bulkd",
388 "urifyHeader": true
389 },
390 {
391 "extColumnName": "ph",
392 "appColumnName": "ph",
393 "urifyHeader": true
394 }
395 ]
396 }
397 ]
398 },
399 {
400 "extFileName": "usm_data_site_succ",
401 "appFiles": [
402 {
403 "appFileName": "usmDataSiteSucc",
404 "columns": [
405 {
406 "extColumnName": "id_profil_csopra",
407 "appColumnName": "id_profil_csopra",
408 "urifyHeader": true
409 },
410 {
411 "extColumnName": "id_succession",
412 "appColumnName": "id_succession",
413 "urifyHeader": true
414 },
415 {
416 "extColumnName": "periode_debut",
417 "appColumnName": "periode_debut",
418 "urifyHeader": true
419 },
420 {
421 "extColumnName": "periode_fin",
422 "appColumnName": "periode_fin",
423 "urifyHeader": true
424 },
425 {
426 "extColumnName": "latitude",
427 "appColumnName": "latitude",
428 "urifyHeader": true
429 },
430 {
431 "extColumnName": "longitude",
432 "appColumnName": "longitude",
433 "urifyHeader": true
434 },
435 {
436 "extColumnName": "x_lambert2_etendu",
437 "appColumnName": "x_lambert2_etendu",
438 "urifyHeader": true
439 },
440 {
441 "extColumnName": "y_lambert2_etendu",
442 "appColumnName": "y_lambert2_etendu",
443 "urifyHeader": true
444 },
445 {
446 "extColumnName": "drain",
447 "appColumnName": "drain",
448 "urifyHeader": true
449 }
450 ]
451 }
452 ]
453 },
454 {
455 "extFileName": "usm_soil_data_timed",
456 "appFiles": [
457 {
458 "appFileName": "usmSoilDataTimed",
459 "columns": [
460 {
461 "extColumnName": "id_profil_csopra",
462 "appColumnName": "id_profil_csopra",
463 "urifyHeader": true
464 },
465 {
466 "extColumnName": "stock_soc",
467 "appColumnName": "stock_soc",
468 "urifyHeader": true
469 },
470 {
471 "extColumnName": "var_stock_soc",
472 "appColumnName": "var_stock_soc",
473 "urifyHeader": true
474 },
475 {
476 "extColumnName": "date_annee",
477 "appColumnName": "date_annee",
478 "urifyHeader": true
479 },
480 {
481 "extColumnName": "demi_ic_stock_soc",
482 "appColumnName": "demi_ic_stock_soc",
483 "urifyHeader": true
484 },
485 {
486 "extColumnName": "d13c",
487 "appColumnName": "d13c",
488 "urifyHeader": true
489 },
490 {
491 "extColumnName": "stock_n",
492 "appColumnName": "stock_n",
493 "urifyHeader": true
494 },
495 {
496 "extColumnName": "c_n",
497 "appColumnName": "c_n",
498 "urifyHeader": true
499 }
500 ]
501 }
502 ]
503 }
504 ]