Mercurial > repos > siwaa > carboseq_s
diff config_mappers/aial.json @ 3:d753f3430970 draft
"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/cc777c42662683b47bdcdcd72d65e0087962b794/toos/CarboSeqSimulator commit cc777c42662683b47bdcdcd72d65e0087962b794-dirty"
| author | siwaa |
|---|---|
| date | Fri, 23 Aug 2024 10:09:37 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/config_mappers/aial.json Fri Aug 23 10:09:37 2024 +0000 @@ -0,0 +1,504 @@ +[ + { + "extFileName": "mat_rot_cult", + "appFiles": [ + { + "appFileName": "matRotCults", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "id_succession", + "appColumnName": "id_succession", + "urifyHeader": true + }, + { + "extColumnName": "id_culture", + "appColumnName": "id_culture", + "urifyHeader": true + }, + { + "extColumnName": "nom_culture", + "appColumnName": "nom_culture", + "urifyHeader": true + }, + { + "extColumnName": "type_culture", + "appColumnName": "type_culture", + "urifyHeader": true + }, + { + "extColumnName": "date_fin", + "appColumnName": "date_fin", + "urifyHeader": true + }, + { + "extColumnName": "date_fin_text", + "appColumnName": "date_fin_text", + "urifyHeader": true + }, + { + "extColumnName": "type_gestion_res", + "appColumnName": "type_gestion_res", + "urifyHeader": true + }, + { + "extColumnName": "culture_intermediaire", + "appColumnName": "culture_intermediaire", + "urifyHeader": true + }, + { + "extColumnName": "date_semis", + "appColumnName": "date_semis", + "urifyHeader": true + }, + { + "extColumnName": "date_semis_text", + "appColumnName": "date_semis_text", + "urifyHeader": true + } + ] + } + ] + }, + { + "extFileName": "mat_rot_fert_min", + "appFiles": [ + { + "appFileName": "matRotFertMin", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "id_succession", + "appColumnName": "id_succession", + "urifyHeader": true + }, + { + "extColumnName": "id_ferti_min", + "appColumnName": "id_ferti_min", + "urifyHeader": true + }, + { + "extColumnName": "date_ferti_min", + "appColumnName": "date_ferti_min", + "urifyHeader": true + }, + { + "extColumnName": "dose_n", + "appColumnName": "dose_n", + "urifyHeader": true + }, + { + "extColumnName": "dose_p", + "appColumnName": "dose_p", + "urifyHeader": true + } + ] + } + ] + }, + { + "extFileName": "mat_rot_fert_org", + "appFiles": [ + { + "appFileName": "matRotFertOrg", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "id_succession", + "appColumnName": "id_succession", + "urifyHeader": true + }, + { + "extColumnName": "id_ferti_org", + "appColumnName": "id_ferti_org", + "urifyHeader": true + }, + { + "extColumnName": "type_ferti_org", + "appColumnName": "type_ferti_org", + "urifyHeader": true + }, + { + "extColumnName": "date_ferti_org", + "appColumnName": "date_ferti_org", + "urifyHeader": true + }, + { + "extColumnName": "masse_carb", + "appColumnName": "masse_carb", + "urifyHeader": true + }, + { + "extColumnName": "fraction_lignine", + "appColumnName": "fraction_lignine", + "urifyHeader": true + }, + { + "extColumnName": "ratio_c_n", + "appColumnName": "ratio_c_n", + "urifyHeader": true + }, + { + "extColumnName": "ratio_c_p", + "appColumnName": "ratio_c_p", + "urifyHeader": true + }, + { + "extColumnName": "ratio_c_s", + "appColumnName": "ratio_c_s", + "urifyHeader": true + } + ] + } + ] + }, + { + "extFileName": "mat_rot_irrigation", + "appFiles": [ + { + "appFileName": "matRotIrrigation", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "id_succession", + "appColumnName": "id_succession", + "urifyHeader": true + }, + { + "extColumnName": "id_irrigation", + "appColumnName": "id_irrigation", + "urifyHeader": true + }, + { + "extColumnName": "date_irrig", + "appColumnName": "date_irrig", + "urifyHeader": true + }, + { + "extColumnName": "dose_irrig", + "appColumnName": "dose_irrig", + "urifyHeader": true + } + ] + } + ] + }, + { + "extFileName": "mat_rot_obs_cult", + "appFiles": [ + { + "appFileName": "matRotObsCult", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "index": 0, + "urifyHeader": true + }, + { + "extColumnName": "id_succession", + "appColumnName": "id_succession", + "index": 1, + "urifyHeader": true + }, + { + "extColumnName": "id_culture", + "appColumnName": "id_culture", + "index": 2, + "urifyHeader": true + }, + { + "extColumnName": "nom_culture", + "appColumnName": "nom_culture", + "index": 3, + "urifyHeader": true + }, + { + "extColumnName": "type_culture", + "appColumnName": "type_culture", + "index": 4 + }, + { + "extColumnName": "num_ordre", + "appColumnName": "num_ordre", + "index": 6, + "urifyHeader": true + }, + { + "extColumnName": "date_fin", + "appColumnName": "date_fin", + "index": 7, + "urifyHeader": true + }, + { + "extColumnName": "date_fin_text", + "appColumnName": "date_fin_text", + "index": 8, + "urifyHeader": true + }, + { + "extColumnName": "culture_intermediaire", + "appColumnName": "culture_intermediaire", + "index": 9, + "urifyHeader": true + }, + { + "extColumnName": "rendement", + "appColumnName": "rendement", + "index": 10, + "urifyHeader": true + }, + { + "extColumnName": "c_plante_aerien_c", + "appColumnName": "c_plante_aerien_c", + "index": 11, + "urifyHeader": true + }, + { + "extColumnName": "c_plante_racine_c", + "appColumnName": "c_plante_racine_c", + "index": 12, + "urifyHeader": true + }, + { + "extColumnName": "frac_of_stem_that_remains", + "appColumnName": "frac_of_stem_that_remains", + "index": 13, + "urifyHeader": true + }, + { + "extColumnName": "flag_yield_remains", + "appColumnName": "flag_yield_remains", + "index": 14, + "urifyHeader": true + }, + { + "extColumnName": "c_woody_elements", + "appColumnName": "c_woody_elements", + "index": 15, + "urifyHeader": true + } + ], + "additionalColumns": [ + { + "columnName": "weather_data_id", + "columnValue": "", + "urifyHeader": true, + "index": 5 + } + ] + } + ] + }, + { + "extFileName": "mat_rot_trav_sol", + "appFiles": [ + { + "appFileName": "matRotTravSol", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "id_succession", + "appColumnName": "id_succession", + "urifyHeader": true + }, + { + "extColumnName": "id_culture", + "appColumnName": "id_culture", + "urifyHeader": true + }, + { + "extColumnName": "type_travsol", + "appColumnName": "type_travsol", + "urifyHeader": true + }, + { + "extColumnName": "date_travsol", + "appColumnName": "date_travsol", + "urifyHeader": true + } + ] + } + ] + }, + { + "extFileName": "usm_data", + "appFiles": [ + { + "appFileName": "usmData", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "no_horizon", + "appColumnName": "no_horizon", + "urifyHeader": true + }, + { + "extColumnName": "prof_sup", + "appColumnName": "prof_sup", + "urifyHeader": true + }, + { + "extColumnName": "prof_inf", + "appColumnName": "prof_inf", + "urifyHeader": true + }, + { + "extColumnName": "clay", + "appColumnName": "clay", + "urifyHeader": true + }, + { + "extColumnName": "sand", + "appColumnName": "sand", + "urifyHeader": true + }, + { + "extColumnName": "silt", + "appColumnName": "silt", + "urifyHeader": true + }, + { + "extColumnName": "bulkd", + "appColumnName": "bulkd", + "urifyHeader": true + }, + { + "extColumnName": "ph", + "appColumnName": "ph", + "urifyHeader": true + } + ] + } + ] + }, + { + "extFileName": "usm_data_site_succ", + "appFiles": [ + { + "appFileName": "usmDataSiteSucc", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "id_succession", + "appColumnName": "id_succession", + "urifyHeader": true + }, + { + "extColumnName": "periode_debut", + "appColumnName": "periode_debut", + "urifyHeader": true + }, + { + "extColumnName": "periode_fin", + "appColumnName": "periode_fin", + "urifyHeader": true + }, + { + "extColumnName": "latitude", + "appColumnName": "latitude", + "urifyHeader": true + }, + { + "extColumnName": "longitude", + "appColumnName": "longitude", + "urifyHeader": true + }, + { + "extColumnName": "x_lambert2_etendu", + "appColumnName": "x_lambert2_etendu", + "urifyHeader": true + }, + { + "extColumnName": "y_lambert2_etendu", + "appColumnName": "y_lambert2_etendu", + "urifyHeader": true + }, + { + "extColumnName": "drain", + "appColumnName": "drain", + "urifyHeader": true + } + ] + } + ] + }, + { + "extFileName": "usm_soil_data_timed", + "appFiles": [ + { + "appFileName": "usmSoilDataTimed", + "columns": [ + { + "extColumnName": "id_profil_csopra", + "appColumnName": "id_profil_csopra", + "urifyHeader": true + }, + { + "extColumnName": "stock_soc", + "appColumnName": "stock_soc", + "urifyHeader": true + }, + { + "extColumnName": "var_stock_soc", + "appColumnName": "var_stock_soc", + "urifyHeader": true + }, + { + "extColumnName": "date_annee", + "appColumnName": "date_annee", + "urifyHeader": true + }, + { + "extColumnName": "demi_ic_stock_soc", + "appColumnName": "demi_ic_stock_soc", + "urifyHeader": true + }, + { + "extColumnName": "d13c", + "appColumnName": "d13c", + "urifyHeader": true + }, + { + "extColumnName": "stock_n", + "appColumnName": "stock_n", + "urifyHeader": true + }, + { + "extColumnName": "c_n", + "appColumnName": "c_n", + "urifyHeader": true + } + ] + } + ] + } +]