view carboseqSplit.xml @ 10:20886bc40659 draft

"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/b1cafd3eb61b631ee0b1f8f6c5ef2f9a0e2b4ccf/toos/CarboSeqSimulator commit b1cafd3eb61b631ee0b1f8f6c5ef2f9a0e2b4ccf-dirty"
author siwaa
date Tue, 17 Sep 2024 16:01:18 +0000
parents 3e7978af2ba2
children e455667fe22f
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<tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.2">
  <description>To split input data of CarboSeq</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
  python $__tool_directory__/csopraSplitInput.py ${inputFile} ${chunkSize}
    ]]>
  </command>
  <inputs>
    <param name="inputFile" type="data" format="zip" label="CarboSeq input (zip)"/>
    <param name="chunkSize" type="integer" value="1" min= "1" max= "20000" format="csv" label="chunck size" help="chunck size" />    
  </inputs>
  <outputs>
    <collection name="splited" type="list" label="A list of CarboSeq input (zip)">
      <discover_datasets pattern="__name_and_ext__" directory="outputs"/>
    </collection>
  </outputs>
<tests>
</tests>
<help>
the CarboSeq CarboseqSimulator tool
===================================

credits
-------
-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
-  Copyright: INRAE
</help>
</tool>