<tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.4">
  <description>To split input data of CarboSeq</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
  python $__tool_directory__/csopraSplitInput.py ${inputFile} ${chunkSize}
    ]]>
  </command>
  <inputs>
    <param name="inputFile" type="data" format="zip" label="CarboSeq input (zip)"/>
    <param name="chunkSize" type="integer" value="1" min= "1" max= "20000" format="csv" label="chunck size" help="chunck size" />    
  </inputs>
  <outputs>
    <collection name="splited" type="list" label="A list of CarboSeq input (zip)">
      <discover_datasets pattern="__name_and_ext__" directory="outputs"/>
    </collection>
  </outputs>
  <tests>
    <test>
      <param name="inputFile" value="input/40Sites/40Sites.zip" />
      <param name="chunkSize" value="10" />          
      <output_collection name="splited" type="list" count="4">
        <element name="input_1">
	  <assert_contents>
	    <has_archive_member path="crop.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="201" />
	    </has_archive_member>
	    <has_archive_member path="soil.csv">
	      <has_text text="ID,LAT" />
	      <has_n_lines n="11" />
	    </has_archive_member>
	    <has_archive_member path="units.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="81" />
	    </has_archive_member>
	  </assert_contents>	  
        </element>
        <element name="input_2">
	  <assert_contents>
	    <has_archive_member path="crop.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="201" />
	    </has_archive_member>
	    <has_archive_member path="soil.csv">
	      <has_text text="ID,LAT" />
	      <has_n_lines n="11" />
	    </has_archive_member>
	    <has_archive_member path="units.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="81" />
	    </has_archive_member>
	  </assert_contents>	  
        </element>
        <element name="input_3">
	  <assert_contents>
	    <has_archive_member path="crop.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="201" />
	    </has_archive_member>
	    <has_archive_member path="soil.csv">
	      <has_text text="ID,LAT" />
	      <has_n_lines n="11" />
	    </has_archive_member>
	    <has_archive_member path="units.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="81" />
	    </has_archive_member>
	  </assert_contents>	  
        </element>
        <element name="input_4">
	  <assert_contents>
	    <has_archive_member path="crop.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="201" />
	    </has_archive_member>
	    <has_archive_member path="soil.csv">
	      <has_text text="ID,LAT" />
	      <has_n_lines n="11" />
	    </has_archive_member>
	    <has_archive_member path="units.csv">
	      <has_text text="ID,NUM,CROP" />
	      <has_n_lines n="81" />
	    </has_archive_member>
	  </assert_contents>	  
        </element>
      </output_collection>
    </test>
    </tests>
<help>
the CarboSeq CarboseqSimulator tool
===================================

credits
-------
-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
-  Copyright: INRAE
</help>
</tool>