Mercurial > repos > siwaa > dairyfit_mergeclim
changeset 0:58f2fb2b8794 draft
"planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
| author | siwaa |
|---|---|
| date | Mon, 23 Feb 2026 14:12:21 +0000 |
| parents | |
| children | 6622d8503a60 |
| files | mergeclim.xml |
| diffstat | 1 files changed, 38 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mergeclim.xml Mon Feb 23 14:12:21 2026 +0000 @@ -0,0 +1,38 @@ +<tool id="mergeClim" name="mergeClim" version="1.0.0"> + <description> + to merge Stics climate files archives tgz to a single zip, and choose meshes to keep + </description> + <command detect_errors="exit_code"> + mkdir toArchive; + #for $i, $input in enumerate($inputData) + echo '${input}'; echo '${input.name}'; + cp '${input}' 'tmp_${i}.tgz'; + mkdir toArchive/climDir${i}; + tar -xvf 'tmp_${i}.tgz' -C 'toArchive/climDir${i}'; + #end for + tree; + mkdir Clim; + cat ${listOfMesh} | xargs -t -i find . -type f -name {}* | xargs -t -i cp {} Clim; + zip -r Clim Clim; + mv Clim.zip ${output}; + </command> + <inputs> + <param name="inputData" type="data" format="tgz" multiple="true" label="a tgz archive of Stics Climate files"/> + <param name="listOfMesh" type="data" format="txt" label="list of mesh"/> + </inputs> + <outputs> + <data format="zip" name="output" label="SticsClimateFiles"/> + </outputs> + <tests> + </tests> + <help> +the mergeClim Tool +================== + +credits +------- +- Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr +- Tool Site: https://forgemia.inra.fr/dairyfit/lot2/dairyfit-toolbox +- Copyright: INRAE + </help> +</tool>