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comparison erecord_json.xml @ 1:d87b8a1073ad draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/erecord-deploy/-/tree/main/galaxy-tools/erecord_json commit ac10d874b1abe19a8c44f861b2f180ff20976b39
author siwaa
date Wed, 13 Dec 2023 21:46:11 +0000
parents 8a0659f23df7
children afc88ac8de69
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0:8a0659f23df7 1:d87b8a1073ad
3 <description>erecord returning .json</description> 3 <description>erecord returning .json</description>
4 4
5 <requirements> 5 <requirements>
6 6
7 <!-- singularity --> 7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/erecord-deploy/erecord_rep0_vle2:82d8fea607be20851e194828125785fb0f7e96d0</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/erecord-deploy/erecord_rep0_vle2:53e4840cd66e45761db955f69203284761fd6df8</container>
9 9
10 </requirements> 10 </requirements>
11 11
12 <command detect_errors="aggressive"> 12 <command detect_errors="aggressive">
13 <![CDATA[ 13 <![CDATA[
14 . /PYVENV/bin/activate;
14 /bin/bash -c "python3 $__tool_directory__/main_json.py -data ${input_json} -datafolder ${datafolder}"; 15 /bin/bash -c "python3 $__tool_directory__/main_json.py -data ${input_json} -datafolder ${datafolder}";
15 cp WS/OUT/output.json ${output_json}; 16 cp WS/OUT/output.json ${output_json};
16 ]]> 17 ]]>
17 </command> 18 </command>
18 19