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annotate ESSAISENCOURS.txt @ 13:13296d4a29cf draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 09:58:18 +0000
parents 614bed83ba5d
children e7772bdae78d
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1 #------------------------------------------------------------------------------
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2 # ESSAIS Vendredi 7 juin
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3 #------------------------------------------------------------------------------
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4 <tool id="gama_tool" name="gama" version="1.0.0b">
e3153cc69e41 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
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6 8000 -> 6868
e3153cc69e41 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
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8 => RES : tourne infini
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10 #------------------------------------------------------------------------------
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11 <tool id="gama_tool" name="gama" version="1.0.0j">
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13 (ajout de traces dans TTT.txt)
614bed83ba5d planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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8623205348e5 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
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15 - /bin/bash cmd_gama_headless.sh > run_server.txt & sleep 20 && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
8623205348e5 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
siwaa
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16 + /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 300 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
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39b499a105c9 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
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18 #------------------------------------------------------------------------------
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19 # ESSAIS Lundi 10 juin
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20 #------------------------------------------------------------------------------
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22 gama.def:
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23 + chmod -R 777 /opt
614bed83ba5d planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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25 <tool id="gama_tool" name="gama" version="1.0.0k"> idem l
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26 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
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13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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28 Singularity> echo $JAVA_HOME
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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29 /opt/openjdk-17
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30 Singularity> which java
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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31 /opt/openjdk-17/bin/java
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32 Singularity> java -version
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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33 openjdk version "17-ea" 2021-09-14
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34 OpenJDK Runtime Environment (build 17-ea+14)
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35 OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing)
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37 vim MY_gama-headless.sh :
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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38 #lun10juin
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39 MY_JAVA_DIR=./_java
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40 mkdir -p ./_java/.systemPrefs
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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41 mkdir -p ./_java/.userPrefs
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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42 #chmod -R 755 ./_java
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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43 chmod -R 777 ./_java
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44 export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
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51 mkdir -p ~/.java/.systemPrefs
13296d4a29cf planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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52 mkdir ~/.java/.userPrefs
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53 chmod -R 755 ~/.java
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54 export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs"
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55 <run appl>
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